Browse Element(s) Details


OsAffx.3953.1.S1_at

Description tigr:9632.m02894
TID=OsAffx.3953.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3052011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30490OsAffx.26254.1.S1_at10/114+18025675..18029365MATE efflux family protein, expressed
LOC_Os04g30500OsAffx.26255.1.S1_at11/114+18031526..18032053hypothetical protein
LOC_Os04g30510OsAffx.14049.1.S1_at11/114+18042450..18043328hypothetical protein
LOC_Os04g30520OsAffx.3953.1.S1_at11/114+18050214..18050642hypothetical protein
LOC_Os04g30530NANA4+18060058..18063002NB-ARC domain containing protein, expressed
LOC_Os04g30540OsAffx.14050.1.S1_at11/114+18063778..18064869Leucine Rich Repeat family protein
LOC_Os04g30550OsAffx.3955.1.S1_at11/114+18067132..18067888GDP-mannose 4,6 dehydratase 1, putative
LOC_Os04g30560OsAffx.26256.1.S1_at11/114+18068110..18068565hypothetical protein
LOC_Os04g30570OsAffx.16783.1.S1_x_at11/114+18070685..18072098HCBT-like putative defense response protein, putative
LOC_Os04g30580NANA4+18073642..18076973transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3953.1.S1_at--565--1495Chr06:11543018..11543037 (20 bp)
AGCAAGCCGAGGACGGCTCGCCGCA
NONE
OsAffx.3953.1.S1_at--440--1251Chr04:18050318..18050342 (25 bp)
AGTTGGCCGCGAGGCAACCATGCTG
LOC_Os04g30520
OsAffx.3953.1.S1_at--223--4071Chr04:18050327..18050351 (25 bp)
CGAGGCAACCATGCTGGCGCGATGC
LOC_Os04g30520
OsAffx.3953.1.S1_at--97--3951Chr04:18050404..18050428 (25 bp)
CGGCAGCCAAGCTCATGTGTGGCGT
LOC_Os04g30520
OsAffx.3953.1.S1_at--1065--3231Chr04:18050411..18050435 (25 bp)
CAAGCTCATGTGTGGCGTAGGCGAC
LOC_Os04g30520
OsAffx.3953.1.S1_at--764--3751Chr04:18050415..18050439 (25 bp)
CTCATGTGTGGCGTAGGCGACCGAC
LOC_Os04g30520
OsAffx.3953.1.S1_at--1152--6911Chr04:18050427..18050451 (25 bp)
GTAGGCGACCGACGTTGCCTCTCCT
LOC_Os04g30520
OsAffx.3953.1.S1_at--192--5831Chr04:18050433..18050457 (25 bp)
GACCGACGTTGCCTCTCCTACTTTT
LOC_Os04g30520
OsAffx.3953.1.S1_at--429--10791Chr04:18050473..18050497 (25 bp)
TTGTTCTTTTTCTTCGACCAGATAA
LOC_Os04g30520
OsAffx.3953.1.S1_at--1011--3631Chr04:18050484..18050508 (25 bp)
CTTCGACCAGATAAAAACCAGATGA
LOC_Os04g30520
OsAffx.3953.1.S1_at--640--7531Chr04:18050569..18050593 (25 bp)
GTGGCATGGTTCTAAATTTGCAAAA
LOC_Os04g30520
Target Sequence 
AGCAAGCCGAGGACGGCTCGCCGCAGCAGCCCGAGGCCGACGCGGCGTGGCTTGGCGGTCGGGCGCCCCCGCAGTTGGCC
GCGAGGCAACCATGCTGGCGCGATGCGGATGGCCGGCACCGGCGCCCCAGGCGTTCAACGACGCGATGGTAGGCGGCGCG
GCAGCCAAGCTCATGTGTGGCGTAGGCGACCGACGTTGCCTCTCCTACTTTTCCCCTTTTCATTTTTTTGTTCTTTTTCT
TCGACCAGATAAAAACCAGATGAAGACGGGAGAAAGAAGGAAGAGATGGAAAAAGAAGGAGATTGATGGAAAAGATGACG
GCAGTGGCATGGTTCTAAATTTGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis