Browse Element(s) Details


OsAffx.26254.1.S1_at

Description tigr:9632.m02891
TID=OsAffx.26254.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MATE efflux family protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3049010/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30450OsAffx.14046.1.S1_at11/114+18003290..18006493Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os04g30460OsAffx.14047.1.S1_at11/114+18010562..18012575hypothetical protein
LOC_Os04g30470OsAffx.26253.1.S1_at11/114+18013500..18016665U-box domain containing protein
LOC_Os04g30480NANA4+18017687..18017935hypothetical protein
LOC_Os04g30490OsAffx.26254.1.S1_at10/114+18025675..18029365MATE efflux family protein, expressed
LOC_Os04g30500OsAffx.26255.1.S1_at11/114+18031526..18032053hypothetical protein
LOC_Os04g30510OsAffx.14049.1.S1_at11/114+18042450..18043328hypothetical protein
LOC_Os04g30520OsAffx.3953.1.S1_at11/114+18050214..18050642hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26254.1.S1_at--133--1551Chr04:18027530..18027550 (21 bp)
AGCATCAGTATTGTCCATTTGCCTG
LOC_Os04g30490
OsAffx.26254.1.S1_at--417--2551Chr04:18027637..18027661 (25 bp)
AACTCGGGTTCCTTGGCATTCATGA
LOC_Os04g30490
OsAffx.26254.1.S1_at--776--10611Chr04:18027667..18027689 (23 bp)
TTCGGCCTTGGTTCAGCCATAAGCA
LOC_Os04g30490
OsAffx.26254.1.S1_at--293--9791NONE
TAAGCACCCGGGTCTCGAATGAGCT
NONE
OsAffx.26254.1.S1_at--592--1051Chr04:18027995..18028019 (25 bp)
AGGTGGTCCAGTACGTCGCGAAGAT
LOC_Os04g30490
OsAffx.26254.1.S1_at--846--5351Chr04:18028014..18028038 (25 bp)
GAAGATGATGCCCATTCTTGCCGTC
LOC_Os04g30490
OsAffx.26254.1.S1_at--162--9571Chr04:18028046..18028070 (25 bp)
TCTTCGATGACCTGCAGTGTGTTCT
LOC_Os04g30490
OsAffx.26254.1.S1_at--570--7791Chr04:18028302..18028326 (25 bp)
GGTGCCATTGTTAACCTTGGAGCGT
LOC_Os04g30490
OsAffx.26254.1.S1_at--651--8531Chr04:18028319..18028343 (25 bp)
TGGAGCGTACTACCTCGTCGGAATT
LOC_Os04g30490
OsAffx.26254.1.S1_at--468--9772Chr04:18038130..18038154 (25 bp)
TAATGTGTGCACTCATCGTTCAGAT
NONE
OsAffx.26254.1.S1_at--793--3431Chr04:18028657..18028681 (25 bp)
CAGATGCTGTTGCTTCTAGCCATAA
LOC_Os04g30490
Target Sequence 
AGCATCAGTATTGTCCATTTGCCTGAACTCGGGTTCCTTGGCATTCATGATCCCTTTCGGCCTTGGTTCAGCCATAAGCA
CCCGGGTCTCGAATGAGCTCGGCGCCGGTCGACCCGAGGCGGCCCGTCTGGCCAGCCGTGTGGTGATGGCGCTGGGTCTC
GTCGTCGGCGTCGCGATCGGGCTCGCCATGATCCTGGTGCGCCATCTATGGGGTTACGCGTACAGCAACGAGGAGGAGGT
GGTCCAGTACGTCGCGAAGATGATGCCCATTCTTGCCGTCTCGTTCCTCTTCGATGACCTGCAGTGTGTTCTGTCAGTGA
GGGATTCTTCAGGTGTTGCAAGAGGCTGTGGGTGGCAAAAGATTGGTGCCATTGTTAACCTTGGAGCGTACTACCTCGTC
GGAATTCCAGCGGCGCTGTGTTTCGCCTTCGTCTACCATCTTGGTGGCATGGGACTGTGGTTAGGGATAATGTGTGCACT
CATCGTTCAGATGCTGTTGCTTCTAGCCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis