Browse Element(s) Details


OsAffx.14046.1.S1_at

Description tigr:9632.m02887
TID=OsAffx.14046.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3045011/11Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30420OsAffx.3952.1.S1_s_at11/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30420Os.51439.1.S1_at11/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30420Os.51439.1.S1_x_at10/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30430Os.17033.1.S1_at11/114+17984772..17989714Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g30440NANA4+17992641..17996530retrotransposon protein, putative, unclassified
LOC_Os04g30450OsAffx.14046.1.S1_at11/114+18003290..18006493Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os04g30460OsAffx.14047.1.S1_at11/114+18010562..18012575hypothetical protein
LOC_Os04g30470OsAffx.26253.1.S1_at11/114+18013500..18016665U-box domain containing protein
LOC_Os04g30480NANA4+18017687..18017935hypothetical protein
LOC_Os04g30490OsAffx.26254.1.S1_at10/114+18025675..18029365MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14046.1.S1_at--176--6891Chr04:18004077..18004101 (25 bp)
GTATAGTTCTACATGCTCCAAAGGA
LOC_Os04g30450
OsAffx.14046.1.S1_at--817--3571Chr04:18004626..18004650 (25 bp)
CATAGTCTATTCTTGCATGGCAGTA
LOC_Os04g30450
OsAffx.14046.1.S1_at--404--10291Chr04:18004671..18004695 (25 bp)
TTTCTGGGTCGTTCATCGGACGGAA
LOC_Os04g30450
OsAffx.14046.1.S1_at--300--10591Chr04:18004728..18004751 (24 bp)
TTCTCTGATGGGATCTCTTACGGTT
LOC_Os04g30450
OsAffx.14046.1.S1_at--816--7531Chr04:18004850..18004874 (25 bp)
GTGGCTATTGCCTTGAAGCTTTCAT
LOC_Os04g30450
OsAffx.14046.1.S1_at--963--7131Chr04:18004883..18004907 (25 bp)
GTGAACCAATTTATCTACGTCCCAA
LOC_Os04g30450
OsAffx.14046.1.S1_at--71--7231Chr04:18004901..18004925 (25 bp)
GTCCCAACCTGGTTCTTTATTGTTG
LOC_Os04g30450
OsAffx.14046.1.S1_at--868--891Chr04:18005410..18005434 (25 bp)
AGGCCCTTGATTCATTCAACACAGC
LOC_Os04g30450
OsAffx.14046.1.S1_at--853--6631Chr04:18005436..18005460 (25 bp)
GTTGTCTCTCCAGTCTATTATGTGA
LOC_Os04g30450
OsAffx.14046.1.S1_at--61--9631Chr04:18005494..18006005 (25 bp)
TCATGTACAAGGACTGGGCCTCTCA
LOC_Os04g30450
OsAffx.14046.1.S1_at--1159--7551Chr04:18005996..18006020 (25 bp)
GGGCCTCTCAGAATGCAACGCAGAT
LOC_Os04g30450
Target Sequence 
GTATAGTTCTACATGCTCCAAAGGAGAAAAAGATCGATTCAGTTAACGAAATATGGCATCTTGCAACTCAACCAGGTTTC
ATAGTCTATTCTTGCATGGCAGTAGTTGTTGCACTTATTTTGATTTTCTGGGTCGTTCATCGGACGGAACAAAGGAAAAT
GCTCGCATATATTGCAATCTGTTCTCTGATGGGATCTCTTACGGTTATCAGTGTAAAAGCAGTGGCTATTGCCTTGAAGC
TTTCATTTAATGGAGTGAACCAATTTATCTACGTCCCAACCTGGTTCTTTATTGTTGTGGTGGTTATATGCTGTTTAGTG
CAGTTGAATTACTTGAACAAGGCCCTTGATTCATTCAACACAGCTGTTGTCTCTCCAGTCTATTATGTGATGTTCACCAT
TCTTACTATTATTGCCAACATGATCATGTACAAGGACTGGGCCTCTCAGAATGCAACGCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis