Browse Element(s) Details


OsAffx.26253.1.S1_at

Description tigr:9632.m02889
TID=OsAffx.26253.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY075636 AT3g07360F21O3_7
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3047011/11U-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30430Os.17033.1.S1_at11/114+17984772..17989714Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g30440NANA4+17992641..17996530retrotransposon protein, putative, unclassified
LOC_Os04g30450OsAffx.14046.1.S1_at11/114+18003290..18006493Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os04g30460OsAffx.14047.1.S1_at11/114+18010562..18012575hypothetical protein
LOC_Os04g30470OsAffx.26253.1.S1_at11/114+18013500..18016665U-box domain containing protein
LOC_Os04g30480NANA4+18017687..18017935hypothetical protein
LOC_Os04g30490OsAffx.26254.1.S1_at10/114+18025675..18029365MATE efflux family protein, expressed
LOC_Os04g30500OsAffx.26255.1.S1_at11/114+18031526..18032053hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26253.1.S1_at--1061--2271Chr04:18014053..18014077 (25 bp)
AAATCCTTGGGTTACTGGCTGACAA
LOC_Os04g30470
OsAffx.26253.1.S1_at--932--1291Chr04:18013863..18013887 (25 bp)
AGATGCTGCTATATCCTTGTTGCGC
LOC_Os04g30470
OsAffx.26253.1.S1_at--420--10691Chr04:18013844..18013868 (25 bp)
TTGCGCGACGACAACCTAGTGGATG
LOC_Os04g30470
OsAffx.26253.1.S1_at--1034--8971Chr04:18013821..18013845 (25 bp)
TGAAGCCCGCAGCATCTTCTTGAAG
LOC_Os04g30470
OsAffx.26253.1.S1_at--533--2931Chr04:18013799..18013823 (25 bp)
AAGGCTACTGGTTTTGAGCTGGCCA
LOC_Os04g30470
OsAffx.26253.1.S1_at--698--5891Chr04:18013784..18013808 (25 bp)
GAGCTGGCCATGACACAGGTTCTGG
LOC_Os04g30470
OsAffx.26253.1.S1_at--566--8191Chr04:18013702..18013726 (25 bp)
GGAATACCTTCATCCGGACGAAATT
LOC_Os04g30470
OsAffx.26253.1.S1_at--1154--2411Chr04:18013638..18013662 (25 bp)
AACAAGGGCCAGTGACGTATTTTCT
LOC_Os04g30470
OsAffx.26253.1.S1_at--557--10591Chr04:18013617..18013641 (25 bp)
TTCTGATACATCTTCTGACGGGAGT
LOC_Os04g30470
OsAffx.26253.1.S1_at--612--6931Chr04:18013592..18013616 (25 bp)
GTAGAACTGCCTATGCACGTTGAAT
LOC_Os04g30470
OsAffx.26253.1.S1_at--327--971Chr04:18013541..18013565 (25 bp)
AGGACCATTGTTTCATGGCTGCAGA
LOC_Os04g30470
Target Sequence 
AAATCCTTGGGTTACTGGCTGACAACTACTACAACAAGATCAAGATCGGTGAACTTGGAGGCTTCGCTGCGCTGATGGAG
CTGCTGCTCTTGGTAGGAGACAGAGAAGTCAAGAGGACGGTGGCGATGGCGATCGCCAGTCTCTGCGAGGCCCAGGAGAA
CTGGAGCAGATTTGTCAGAGAGGGAGTAGCAGATGCTGCTATATCCTTGTTGCGCGACGACAACCTAGTGGATGAAGCCC
GCAGCATCTTCTTGAAGGCTACTGGTTTTGAGCTGGCCATGACACAGGTTCTGGATAAGCTGATGTCATTTGGCGATGAT
GCCAACTGCTTAAAGATGGTTGAGAGCATCTGGAATACCTTCATCCGGACGAAATTAAGACGAAGGCGCCCCAACGTTAC
TCATGCATCTTCCTCAACAAGGGCCAGTGACGTATTTTCTGATACATCTTCTGACGGGAGTGTAGAACTGCCTATGCACG
TTGAATTGACAGACAAGGCCGAGGACGATGTTAGGACCATTGTTTCATGGCTGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis