Browse Element(s) Details


OsAffx.3952.1.S1_s_at

Description tigr:9632.m02884
TID=OsAffx.3952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, zinc-binding dehydrogenase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3042011/11Chloroplastic quinone-oxidoreductase homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30410Os.55085.1.S1_at11/114+17962479..17966088hypothetical protein
LOC_Os04g30410OsAffx.14045.1.S1_at10/114+17962479..17966088hypothetical protein
LOC_Os04g30420OsAffx.3952.1.S1_s_at11/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30420Os.51439.1.S1_at11/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30420Os.51439.1.S1_x_at10/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30430Os.17033.1.S1_at11/114+17984772..17989714Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g30440NANA4+17992641..17996530retrotransposon protein, putative, unclassified
LOC_Os04g30450OsAffx.14046.1.S1_at11/114+18003290..18006493Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3952.1.S1_s_at--971--8671Chr04:17984244..17984268 (25 bp)
TGTCGCCGAACAAGGCCGACCTGGA
LOC_Os04g30420
OsAffx.3952.1.S1_s_at--813--1451Chr04:17984355..17984379 (25 bp)
AGAAGAGCATCGACGGCCACGCCAC
LOC_Os04g30420
OsAffx.3952.1.S1_s_at--469--4411Chr04:17984375..17984399 (25 bp)
GCCACCGGCAAGATAGTCGTTGAGA
LOC_Os04g30420
OsAffx.3952.1.S1_s_at--1064--3511Chr04:17984417..17984441 (25 bp)
CATGTTGGCATGTTCGGTTGTTCTT
LOC_Os04g30420
OsAffx.3952.1.S1_s_at--959--3511Chr04:17984425..17984449 (25 bp)
CATGTTCGGTTGTTCTTGTTTGTTC
LOC_Os04g30420
OsAffx.3952.1.S1_s_at--589--8791Chr04:17984435..17984459 (25 bp)
TGTTCTTGTTTGTTCGTGGGTGGAA
LOC_Os04g30420
OsAffx.3952.1.S1_s_at--497--7611Chr04:17984494..17984518 (25 bp)
GGGAATACTAGTCAGTTTGGCATCT
LOC_Os04g30420
OsAffx.3952.1.S1_s_at--73--3451Chr04:17984506..17984530 (25 bp)
CAGTTTGGCATCTGTTTAGTTTGAT
LOC_Os04g30420
OsAffx.3952.1.S1_s_at--32--5691Chr04:17984536..17984560 (25 bp)
GACTTGGTGATGATATATACTCGAG
LOC_Os04g30420
OsAffx.3952.1.S1_s_at--373--331Chr04:17984552..17984576 (25 bp)
ATACTCGAGATTTGTTTCTCTCTTC
LOC_Os04g30420
OsAffx.3952.1.S1_s_at--896--6831Chr04:17984565..17984589 (25 bp)
GTTTCTCTCTTCTGCGTTTTGAAGA
LOC_Os04g30420
Target Sequence 
TGTCGCCGAACAAGGCCGACCTGGAGTTCTTGGTCGGGCTGGTGGGGGAAGGGAAGCTCAGGACGGTGGTGGACTCGAGG
TTCCCGCTGGGCGACGCGGCGAAGGCGTGGCAGAAGAGCATCGACGGCCACGCCACCGGCAAGATAGTCGTTGAGATGGA
AGGGTGATAGTATCATGTTGGCATGTTCGGTTGTTCTTGTTTGTTCGTGGGTGGAAACTTACATTGGTTGGAACATAACA
ATACAGAATAGGGAATACTAGTCAGTTTGGCATCTGTTTAGTTTGATGATATGACTTGGTGATGATATATACTCGAGATT
TGTTTCTCTCTTCTGCGTTTTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3952.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis