Browse Element(s) Details


Os.55085.1.S1_at

Description gb:AK107450.1
DB_XREF= gi:32992659
TID=Os.55085.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55085 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C04, full insert sequence.
FL= gb:AK107450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3041011/11hypothetical protein
LOC_Os07g240401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30370NANA4+17934039..17938750Protein kinase domain containing protein
LOC_Os04g30380Os.27639.1.S1_x_at9/114+17939380..17944436transposon protein, putative, unclassified, expressed
LOC_Os04g30380OsAffx.8980.1.S1_at4/114+17939380..17944436transposon protein, putative, unclassified, expressed
LOC_Os04g30390OsAffx.14044.1.S1_at10/114+17950235..17952489hypothetical protein
LOC_Os04g30410Os.55085.1.S1_at11/114+17962479..17966088hypothetical protein
LOC_Os04g30410OsAffx.14045.1.S1_at10/114+17962479..17966088hypothetical protein
LOC_Os04g30420OsAffx.3952.1.S1_s_at11/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30420Os.51439.1.S1_at11/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30420Os.51439.1.S1_x_at10/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30430Os.17033.1.S1_at11/114+17984772..17989714Nuclear transport factor 2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55085.1.S1_at--888--2793Chr04:17962902..17962926 (25 bp)
AAGATGGCCACGCTGGACGGGCGAG
LOC_Os04g30410
Os.55085.1.S1_at--616--1018Chr12:6471065..6471084 (20 bp)
AGGTTGAGACTCTTCTTTGATGGCC
NONE
Os.55085.1.S1_at--111--1415Chr12:6471066..6471085 (20 bp)
AGACTCTTCTTTGATGGCCGGACGG
NONE
Os.55085.1.S1_at--239--3971Chr04:17963055..17963079 (25 bp)
CGGTGGCTACGTGTCAAAGGGAATT
LOC_Os04g30410
Os.55085.1.S1_at--572--10231Chr04:17963112..17963136 (25 bp)
TTTGACGCGGGAGAGTAGAACAACA
LOC_Os04g30410
Os.55085.1.S1_at--48--1331Chr04:17963123..17963147 (25 bp)
AGAGTAGAACAACAGGCGAAAGCCT
LOC_Os04g30410
Os.55085.1.S1_at--282--7591Chr04:17963197..17963221 (25 bp)
GGGCATTGTCGTGTTTTCTATTTTT
LOC_Os04g30410
Os.55085.1.S1_at--1062--4931Chr04:17963199..17963223 (25 bp)
GCATTGTCGTGTTTTCTATTTTTCC
LOC_Os04g30410
Os.55085.1.S1_at--565--9571Chr04:17963257..17963281 (25 bp)
TTACCTAGGACGGACGGTGGCGGCG
LOC_Os04g30410
Os.55085.1.S1_at--709--8251Chr04:17963308..17963332 (25 bp)
GGCATCGTTTAGAAGTCCTATTCCT
LOC_Os04g30410
Os.55085.1.S1_at--1142--9853Chr10:20504842..20504863 (22 bp)
TTAAACAGTAGGATCAGACGTAGAC
NONE
Target Sequence 
AAGATGGCCACGCTGGACGGGCGAGTGCGGGGAGAGGGGATCCATTCTTCTCTCTCACCTTCTCCCTCTCCAACCCAACC
ACGTGGATGGACGTGAAGCGCGGTGAAGGTTGAGACTCTTCTTTGATGGCCGGACGGTGGCGAGGCGTCGGCGCGGTGGC
TACGTGTCAAAGGGAATTAGATGGTGGTTCTGCTAAACTGGCATGCACTTTTTGACGCGGGAGAGTAGAACAACAGGCGA
AAGCCTAGCTTTCGGGCCGGCAACGGCGACGCCTACGGGCGCCGTTTTCCCCTTGGGGCATTGTCGTGTTTTCTATTTTT
CCCAGTGGGTTCTTCAGGTGAAAACCTCGTCCTGGTTACCTAGGACGGACGGTGGCGGCGCTTTTGTCGTCGTTTTCCTT
CTTGGAGGCATCGTTTAGAAGTCCTATTCCTTTGGGGTGTTGTGTGCTTGTTTTGTTTTAAACAGTAGGATCAGACGTAG
AC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis