Browse Element(s) Details


Os.51439.1.S1_at

Description gb:AK062814.1
DB_XREF= gi:32972832
TID=Os.51439.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51439 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-E05, full insert sequence.
FL= gb:AK062814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3042011/11Chloroplastic quinone-oxidoreductase homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30410Os.55085.1.S1_at11/114+17962479..17966088hypothetical protein
LOC_Os04g30410OsAffx.14045.1.S1_at10/114+17962479..17966088hypothetical protein
LOC_Os04g30420OsAffx.3952.1.S1_s_at11/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30420Os.51439.1.S1_at11/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30420Os.51439.1.S1_x_at10/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30430Os.17033.1.S1_at11/114+17984772..17989714Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g30440NANA4+17992641..17996530retrotransposon protein, putative, unclassified
LOC_Os04g30450OsAffx.14046.1.S1_at11/114+18003290..18006493Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51439.1.S1_at--882--4171Chr04:17981386..17981410 (25 bp)
CCCACCTGAAGAAAAACGAGACGAG
LOC_Os04g30420
Os.51439.1.S1_at--911--5991Chr04:17981403..17981427 (25 bp)
GAGACGAGATTCTCTCGCTCTCTTC
LOC_Os04g30420
Os.51439.1.S1_at--471--6051Chr04:17981408..17981432 (25 bp)
GAGATTCTCTCGCTCTCTTCCGGCG
LOC_Os04g30420
Os.51439.1.S1_at--589--9571Chr04:17981423..17981447 (25 bp)
TCTTCCGGCGAGATTTTCGTCTTTC
LOC_Os04g30420
Os.51439.1.S1_at--33--10751Chr04:17983513..17983537 (25 bp)
TTGAACAGTATGGTAAGTTCTTTCC
LOC_Os04g30420
Os.51439.1.S1_at--84--9791Chr04:17983526..17983550 (25 bp)
TAAGTTCTTTCCACTCCTGTGTCAT
LOC_Os04g30420
Os.51439.1.S1_at--507--10291Chr04:17983533..17983557 (25 bp)
TTTCCACTCCTGTGTCATGTTTTTT
LOC_Os04g30420
Os.51439.1.S1_at--544--3331Chr04:17983537..17983561 (25 bp)
CACTCCTGTGTCATGTTTTTTGGTT
LOC_Os04g30420
Os.51439.1.S1_at--597--7451Chr04:17983544..17983568 (25 bp)
GTGTCATGTTTTTTGGTTTGCCATT
LOC_Os04g30420
Os.51439.1.S1_at--662--8571Chr04:17983557..17983581 (25 bp)
TGGTTTGCCATTTCAACTTAACAAT
LOC_Os04g30420
Os.51439.1.S1_at--569--9691Chr04:17983569..17983593 (25 bp)
TCAACTTAACAATATCATGCCCTGC
LOC_Os04g30420
Target Sequence 
CCCACCTGAAGAAAAACGAGACGAGATTCTCTCGCTCTCTTCCGGCGAGATTTTCGTCTTTCCCCCCTCTCCTCTCCGCT
CCTCGTCTCGTCTCTCCGCTTCCCCTCCTCTCTCGATTCCCCACCATGGCCGGAGCCGCCGCGACGCCGCCGGCGATGAT
GCGCGCCGTGCAGTACGACGCCAGCGGCGGGGGAGCCGCCGGGCTCAAGCATGTTGAAGTCCCGGTCCCTTCGGCAAAGA
AGAACGAGGTGCTGTTGAAGCTGGAGGCAGCGACCATCAATCCAGTTGACTGGAAGATTCAGAAAGGGATGCTGCGTCCT
CTGCTGCCTCGTAGACTGCCTTTTATCCCAGTGACCGATGTTGCAGGAGTGGTTGCTGGTGTTGGTCCCGGAGTGAATGA
TTTCGCAGTAGGTGATCAAGTTGTCGCTATGTTGAACAGTATGGTAAGTTCTTTCCACTCCTGTGTCATGTTTTTTGGTT
TGCCATTTCAACTTAACAATATCATGCCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis