Browse Element(s) Details


OsAffx.16783.2.S1_at

Description tigr:9636.m00098
TID=OsAffx.16783.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HCBT-like putative defense response protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0198011/11HCBT-like putative defense response protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01960NANA8+604175..605776HCBT-like putative defense response protein, putative
LOC_Os08g01970NANA8+613255..616064transposon protein, putative, unclassified
LOC_Os08g01980OsAffx.16783.2.S1_at11/118+626428..627822HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01980OsAffx.16783.1.S1_x_at3/118+626428..627822HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01990OsAffx.28984.1.S1_at11/118+629043..629594hypothetical protein
LOC_Os08g01990OsAffx.28984.1.S1_x_at11/118+629043..629594hypothetical protein
LOC_Os08g02000Os.7388.2.S1_x_at1/118+630355..637366expressed protein
LOC_Os08g02010OsAffx.16785.1.S1_at11/118+641886..642197hypothetical protein
LOC_Os08g02020OsAffx.16783.1.S1_x_at2/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02020OsAffx.3956.1.S1_at1/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02030Os.19547.1.S1_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030Os.19547.1.S1_x_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030OsAffx.16783.1.S1_x_at2/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02040OsAffx.5678.1.S1_x_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02040Os.53314.1.S1_at11/118+652201..655244pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16783.2.S1_at--783--3791Chr08:626958..626982 (25 bp)
CTCGCGCACACCTGGCGAGCTGTGT
LOC_Os08g01980
OsAffx.16783.2.S1_at--542--1311Chr08:626909..626933 (25 bp)
AGATGGAGACGAGCTATGGCCTTTC
LOC_Os08g01980
OsAffx.16783.2.S1_at--747--8531Chr08:626906..626930 (25 bp)
TGGAGACGAGCTATGGCCTTTCCGT
LOC_Os08g01980
OsAffx.16783.2.S1_at--307--1871Chr08:626901..626925 (25 bp)
ACGAGCTATGGCCTTTCCGTGGGAT
LOC_Os08g01980
OsAffx.16783.2.S1_at--1114--1551Chr08:626898..626922 (25 bp)
AGCTATGGCCTTTCCGTGGGATTGC
LOC_Os08g01980
OsAffx.16783.2.S1_at--13--871Chr08:626894..626918 (25 bp)
ATGGCCTTTCCGTGGGATTGCGAGC
LOC_Os08g01980
OsAffx.16783.2.S1_at--648--4451Chr08:626891..626915 (25 bp)
GCCTTTCCGTGGGATTGCGAGCACG
LOC_Os08g01980
OsAffx.16783.2.S1_at--636--5891Chr08:626796..626820 (25 bp)
GAGCTCCTCGACAAAGGGCTGGGCT
LOC_Os08g01980
OsAffx.16783.2.S1_at--929--3951Chr08:626693..626717 (25 bp)
CGGAGAAGCCGAGCTTCATGATGGT
LOC_Os08g01980
OsAffx.16783.2.S1_at--559--4071Chr08:626684..626708 (25 bp)
CGAGCTTCATGATGGTGGCGGACCT
LOC_Os08g01980
OsAffx.16783.2.S1_at--261--4911Chr08:626681..626705 (25 bp)
GCTTCATGATGGTGGCGGACCTGCA
LOC_Os08g01980
Target Sequence 
CTCGCGCACACCTGGCGAGCTGTGTGCCGAGCCCGCCGCCTCGCGCCGGAGATGGAGACGAGCTATGGCCTTTCCGTGGG
ATTGCGAGCACGGGTCAAGGAGGTGCCACAAGAGTACATGGGCAACACGGTGGTGGGCGCCGTCGCGAAGGCCACCGCCG
GCGAGCTCCTCGACAAAGGGCTGGGCTGGGCGGCGTGGCTGCTGAACCGCGCCGTGGCGGCGTCGGGCGACGAGGCGAGC
GTGAGGCGCATGGTGGCGGCGTGGCCGGAGAAGCCGAGCTTCATGATGGTGGCGGACCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16783.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis