Browse Element(s) Details


Os.19547.1.S1_x_at

Description gb:AK070381.1
DB_XREF= gi:32980405
TID=Os.19547.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19547 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054J24, full insert sequence.
FL= gb:AK070381.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0203011/11HCBT-like putative defense response protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01980OsAffx.16783.2.S1_at11/118+626428..627822HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01980OsAffx.16783.1.S1_x_at3/118+626428..627822HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01990OsAffx.28984.1.S1_at11/118+629043..629594hypothetical protein
LOC_Os08g01990OsAffx.28984.1.S1_x_at11/118+629043..629594hypothetical protein
LOC_Os08g02000Os.7388.2.S1_x_at1/118+630355..637366expressed protein
LOC_Os08g02010OsAffx.16785.1.S1_at11/118+641886..642197hypothetical protein
LOC_Os08g02020OsAffx.16783.1.S1_x_at2/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02020OsAffx.3956.1.S1_at1/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02030Os.19547.1.S1_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030Os.19547.1.S1_x_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030OsAffx.16783.1.S1_x_at2/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02040OsAffx.5678.1.S1_x_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02040Os.53314.1.S1_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02050Os.14853.1.S1_at10/118+655822..661212protein kinase family protein, putative, expressed
LOC_Os08g02060Os.5714.1.S1_at10/118+664913..668380expressed protein
LOC_Os08g02060OsAffx.28871.1.S1_at1/118+664913..668380expressed protein
LOC_Os08g02070Os.4174.1.S1_at10/118+673011..675392Agamous-like MADS box protein AGL12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19547.1.S1_x_at--131--5751Chr08:649958..649982 (25 bp)
GACGGCGTGGCAGCTGAACAAGTAC
LOC_Os08g02030
Os.19547.1.S1_x_at--996--8711Chr08:649944..649968 (25 bp)
TGAACAAGTACGTGGCGTCGTTCGA
LOC_Os08g02030
Os.19547.1.S1_x_at--116--3231Chr08:649940..649964 (25 bp)
CAAGTACGTGGCGTCGTTCGACGAG
LOC_Os08g02030
Os.19547.1.S1_x_at--1013--8111Chr08:649874..649898 (25 bp)
GGACTTCTTCTCCGTCCTGAGCCTG
LOC_Os08g02030
Os.19547.1.S1_x_at--826--10531Chr08:649633..649657 (25 bp)
TTCATGGGCGCGGTGACCACGCCAT
LOC_Os08g02030
Os.19547.1.S1_x_at--90--7391Chr08:649621..649645 (25 bp)
GTGACCACGCCATGAGTTGCATCCA
LOC_Os08g02030
Os.19547.1.S1_x_at--1135--9051Chr08:649596..649620 (25 bp)
TGCATGCTTCTATTCATTGCGATTT
LOC_Os08g02030
Os.19547.1.S1_x_at--105--3531Chr08:649594..649618 (25 bp)
CATGCTTCTATTCATTGCGATTTGC
LOC_Os08g02030
Os.19547.1.S1_x_at--439--2071Chr08:649547..649571 (25 bp)
ACATTCACATCGACATCATGTAATC
LOC_Os08g02030
Os.19547.1.S1_x_at--52--671Chr08:649492..649516 (25 bp)
ATGAATTCATCAACAGCTATAGCTG
LOC_Os08g02030
Os.19547.1.S1_x_at--376--7356Chr04:33405116..33405136 (21 bp)
GTGAAGTGAAATTTCGAATGGTTTT
NONE
Target Sequence 
GACGGCGTGGCAGCTGAACAAGTACGTGGCGTCGTTCGACGAGGCGGCCATGAGGGGCGCGCTGGCGTCGTGGCCGCNNN
NGCCGGACTTCTTCTCCGTCCTGAGCCTGCTCGGCGGCGCCGCCATCATCACGGGGAGCTCNCCGCGGTTCGACGTGTTC
GGCAACGACTTCGGGTGGGGGAGGCCGGCGACCGTGCGGAGCGGCGGCGCGAACNAGTTCGACGGGAAGGTGACGGTGTA
CGAGGGGCCGGACGGCGCCGGGAGCATGTCGCTGGAGGTTTGCCTGACTCCGGCGGCGCTGGCGAAGCTCGTCGCCGACG
AGGAGTTCATGGGCGCGGTGACCACGCCATGAGTTGCATCCANTGCATGCTTCTATTCATTGCGATTTGCNAGCTCNATT
GGTTAAAAAAAAANACATTCACATCGACATCATGTAATCCNTTTATGTCANANTTGTCAGTAGAAAGGTGATGAATTCAT
CAACAGCTATAGCTGATAGATCANGAGATATCACNTGGATTACCTTTTGTATCNAACNAGGATAAATCNATATGTTTGTG
AAGTGAAATTTCGAATGGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19547.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis