Browse Element(s) Details


Os.14853.1.S1_at

Description gb:AK104081.1
DB_XREF= gi:32989290
TID=Os.14853.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-B08, full insert sequence.
FL= gb:AK072696.1 gb:AK104081.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0205010/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02000Os.7388.2.S1_x_at1/118+630355..637366expressed protein
LOC_Os08g02010OsAffx.16785.1.S1_at11/118+641886..642197hypothetical protein
LOC_Os08g02020OsAffx.16783.1.S1_x_at2/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02020OsAffx.3956.1.S1_at1/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02030Os.19547.1.S1_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030Os.19547.1.S1_x_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030OsAffx.16783.1.S1_x_at2/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02040OsAffx.5678.1.S1_x_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02040Os.53314.1.S1_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02050Os.14853.1.S1_at10/118+655822..661212protein kinase family protein, putative, expressed
LOC_Os08g02060Os.5714.1.S1_at10/118+664913..668380expressed protein
LOC_Os08g02060OsAffx.28871.1.S1_at1/118+664913..668380expressed protein
LOC_Os08g02070Os.4174.1.S1_at10/118+673011..675392Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os08g02080Os.10438.1.S1_at11/118+676235..677788Rickettsia 17 kDa surface antigen family protein, expressed
LOC_Os08g02094OsAffx.5679.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.52874.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.48426.1.A1_at1/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14853.1.S1_at--693--4631Chr08:656159..656183 (25 bp)
GCGATTCAATGTGTTGTGGAGCCCC
LOC_Os08g02050
Os.14853.1.S1_at--328--9991Chr08:656106..656130 (25 bp)
TAGCGTATGTTTCTGCGCCGTCAAA
LOC_Os08g02050
Os.14853.1.S1_at--583--7872Chr08:656074..656098 (25 bp)
GGTTTCTTTCTGCTAGATGTTCCAC
LOC_Os08g02050
Os.14853.1.S1_at--949--1291Chr08:656060..656084 (25 bp)
AGATGTTCCACCCATTGCAGTGGTT
LOC_Os08g02050
Os.14853.1.S1_at--345--8811Chr08:656010..656034 (25 bp)
TGTTCCTGTAGAGATTCACCGCCTG
LOC_Os08g02050
Os.14853.1.S1_at--1098--9191Chr08:655985..656009 (25 bp)
TCCAAGCTTAGCATAGGGCGTCGAA
LOC_Os08g02050
Os.14853.1.S1_at--168--5351Chr08:655950..655974 (25 bp)
GAAGATTTGGTTGTCCACAGCCACC
LOC_Os08g02050
Os.14853.1.S1_at--873--4411Chr08:655931..655955 (25 bp)
GCCACCAATTGTATATCTCGAGAGA
LOC_Os08g02050
Os.14853.1.S1_at--719--6071Chr08:655908..655932 (25 bp)
GAGTATCCTCCCCTTGAAATTGATT
LOC_Os08g02050
Os.14853.1.S1_at--63--9871Chr08:655881..655905 (25 bp)
TACACCTGTTTTTTGGCAGATGACA
LOC_Os08g02050
Os.14853.1.S1_at--320--8611Chr08:655822..655846 (25 bp)
TGGTGCCCTCTGGTGTTTACCTTGT
NONE
Target Sequence 
GCGATTCAATGTGTTGTGGAGCCCCCATTTCAGCCATGAAAAACAATAGAAAGTAGCGTATGTTTCTGCGCCGTCAAAGC
GGAGAGGTTTCTTTCTGCTAGATGTTCCACCCATTGCAGTGGTTTGGTTTTCACCAGCAAAAGGAAACCTGTTCCTGTAG
AGATTCACCGCCTGTCCAAGCTTAGCATAGGGCGTCGAAAATATTTGCTGAAGATTTGGTTGTCCACAGCCACCAATTGT
ATATCTCGAGAGAGTATCCTCCCCTTGAAATTGATTCTTACACCTGTTTTTTGGCAGATGACAAGAGAAAAAATAATATA
ATGGAAGTACAGATCNTTGGTGCCCTCTGGTGTTTACCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis