Browse Element(s) Details


Os.52993.1.S1_at

Description gb:AK070327.1
DB_XREF= gi:32980351
TID=Os.52993.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047N24, full insert sequence.
FL= gb:AK070327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0218011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02130Os.6320.1.S1_at10/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130Os.54405.1.S1_at2/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.21108.1.S1_x_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.8723.1.S1_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02140Os.10262.1.S1_at11/118+709296..713823U-box domain containing protein, expressed
LOC_Os08g02150Os.57291.1.S1_at7/118+714171..715518expressed protein
LOC_Os08g02160OsAffx.16786.1.S1_at11/118+725881..728248No apical meristem protein, expressed
LOC_Os08g02170Os.51205.1.S1_at11/118+728293..729317expressed protein
LOC_Os08g02180Os.52993.1.S1_at11/118+728348..728904expressed protein
LOC_Os08g02190OsAffx.5680.1.S1_at10/118+732945..739124expressed protein
LOC_Os08g02190Os.27946.1.S1_at1/118+732945..739124expressed protein
LOC_Os08g02200Os.51266.1.S1_at11/118+740152..740787expressed protein
LOC_Os08g02210Os.10410.1.S1_at11/118+744994..746908expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52993.1.S1_at--620--611Chr08:728852..728876 (25 bp)
ATGCGAGGAGTCATCTTGCTGCGTT
LOC_Os08g02180
Os.52993.1.S1_at--997--6091Chr08:728845..728869 (25 bp)
GAGTCATCTTGCTGCGTTACGAGGA
LOC_Os08g02180
Os.52993.1.S1_at--763--10711Chr08:728837..728861 (25 bp)
TTGCTGCGTTACGAGGAGGACGCCA
LOC_Os08g02180
Os.52993.1.S1_at--885--4271Chr08:728475..728499 (25 bp)
CCTGTAGTCTGTAGATCCATGGAAG
LOC_Os08g02180
Os.52993.1.S1_at--985--571Chr08:728461..728485 (25 bp)
ATCCATGGAAGGTGATGCGGCATCT
LOC_Os08g02180
Os.52993.1.S1_at--1006--6331Chr08:728448..728472 (25 bp)
GATGCGGCATCTGGATTGGATTGGA
LOC_Os08g02180
Os.52993.1.S1_at--590--31Chr08:728434..728458 (25 bp)
ATTGGATTGGATCGCCATGTAAATG
LOC_Os08g02180
Os.52993.1.S1_at--730--751Chr08:728418..728442 (25 bp)
ATGTAAATGTAATTAGCGCGCTAGC
LOC_Os08g02180
Os.52993.1.S1_at--509--9751Chr08:728409..728433 (25 bp)
TAATTAGCGCGCTAGCTACTCCGGA
LOC_Os08g02180
Os.52993.1.S1_at--146--4591Chr08:728401..728425 (25 bp)
GCGCTAGCTACTCCGGATGCGGCAA
LOC_Os08g02180
Os.52993.1.S1_at--911--6812Chr08:728364..728388 (25 bp)
GTTTTTGTTGATGAGATTCCTCGAA
LOC_Os08g02180
Target Sequence 
ATGCGAGGAGTCATCTTGCTGCGTTACGAGGAGGACGCCATGGCCGGGCACAGGTCCACGGCGGCGGCGACGGGAGGGAG
ATTGTACGGACAGGTGGGAGTGAAGCGGAGAGTGGTGGAGGAGACGGCGGCGGCGGTGGAAGTAGGCGGAGGAGGAGGAG
GGTACTTGGGGGTGGAGGCGGCGGTGCTGCTCGGGGTGGTGACGGCGACGCTGCTGGTGCTGCCGCTGCTGCTGCCGCCG
CTGCCGCCGCCGCCGCCGATGCTGCTGCTCGTGCCCGTCGCCATCTTCGCCGTGCTCCTCCTCCTCGTCCTGCTGCCCTC
CGACGCCAAGTCCATCGCCGCCGCTGGCCGACCCTCTTCTTCCTCCTCCTCCTCCTACCTGTAGTCTGTAGATCCATGGA
AGGTGATGCGGCATCTGGATTGGATTGGATCGCCATGTAAATGTAATTAGCGCGCTAGCTACTCCGGATGCGGCAATGTT
TTTTTTTTGTTTTTGTTGATGAGATTCCTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis