Browse Element(s) Details


Os.51266.1.S1_at

Description gb:AK062376.1
DB_XREF= gi:32972394
TID=Os.51266.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B01, full insert sequence.
FL= gb:AK062376.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0220011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02150Os.57291.1.S1_at7/118+714171..715518expressed protein
LOC_Os08g02160OsAffx.16786.1.S1_at11/118+725881..728248No apical meristem protein, expressed
LOC_Os08g02170Os.51205.1.S1_at11/118+728293..729317expressed protein
LOC_Os08g02180Os.52993.1.S1_at11/118+728348..728904expressed protein
LOC_Os08g02190OsAffx.5680.1.S1_at10/118+732945..739124expressed protein
LOC_Os08g02190Os.27946.1.S1_at1/118+732945..739124expressed protein
LOC_Os08g02200Os.51266.1.S1_at11/118+740152..740787expressed protein
LOC_Os08g02210Os.10410.1.S1_at11/118+744994..746908expressed protein
LOC_Os08g02220Os.54829.1.S1_at11/118+756868..758778Endoglucanase 1 precursor, putative, expressed
LOC_Os08g02230Os.27067.2.A1_at11/118+761993..764528plant-specific FAD-dependent oxidoreductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51266.1.S1_at--24--3651Chr08:740188..740212 (25 bp)
CTTCCTGTCACCATTCCAAAGTATA
LOC_Os08g02200
Os.51266.1.S1_at--22--5151Chr08:740449..740473 (25 bp)
GCAACCGCCGTCTACTGTAAGTGAT
LOC_Os08g02200
Os.51266.1.S1_at--113--7411Chr08:740469..740493 (25 bp)
GTGATCACAAAGGATCTCACGCCGC
LOC_Os08g02200
Os.51266.1.S1_at--620--4531Chr08:740512..740536 (25 bp)
GCCGCCATTGTCCATGGTGGTAATC
LOC_Os08g02200
Os.51266.1.S1_at--389--7491Chr08:740528..740552 (25 bp)
GTGGTAATCGACAAGTAGCTAGCTA
LOC_Os08g02200
Os.51266.1.S1_at--204--10011Chr08:740559..740583 (25 bp)
TAGCAGCAACTTACGGTACACGGAC
LOC_Os08g02200
Os.51266.1.S1_at--186--1231Chr08:740627..740651 (25 bp)
AGTTCTTGGAGTTCATCGATCTCAT
LOC_Os08g02200
Os.51266.1.S1_at--149--10551Chr08:740638..740662 (25 bp)
TTCATCGATCTCATCTTTTTCTGCT
LOC_Os08g02200
Os.51266.1.S1_at--513--10571Chr08:740664..740688 (25 bp)
TTCTTTCTATGGATTATGTGCGTGT
LOC_Os08g02200
Os.51266.1.S1_at--930--9671Chr08:740704..740728 (25 bp)
TCACATGTAGTAGAGCTCAGTGCAT
LOC_Os08g02200
Os.51266.1.S1_at--525--5951Chr08:740732..740756 (25 bp)
GAGAATTGCTGTACTTTTACCGAAT
LOC_Os08g02200
Target Sequence 
CTTCCTGTCACCATTCCAAAGTATATACGGCATGGACGACGACGAGAAGCCGCCGGCGGCGGCGGCGGGCGCCATCGGCG
GCGAGGTGGCAGCGGGTGCCGTCGCCGTGGACGCGTGCCTGGTGGCGGCGGCCATGGCGGGGGCGTCGCTGCTGGCGTGG
TGGGCCGTGGCGTTCCACCCGTCCAACAGCCGGCTGTGGATGGTGCCCGTCGGCCTCGTCCTCGCCTGCACTCCGGCCAT
CGTCTACCTCGCCCTCTCCTTGCAACCGCCGTCTACTGTAAGTGATCACAAAGGATCTCACGCCGCCGGCCACCCGCCGC
CGCCGCCGCCATTGTCCATGGTGGTAATCGACAAGTAGCTAGCTAGCTAGCTAGCAGCAACTTACGGTACACGGACAATA
TATATTGATAGTGATCGTGCATGTAATAATTAATTCTTTAGTTCTTGGAGTTCATCGATCTCATCTTTTTCTGCTTTTCT
TTCTATGGATTATGTGCGTGTGTAATTATGTACAGATCACATGTAGTAGAGCTCAGTGCATGATGAGAATTGCTGTACTT
TTACCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis