Browse Element(s) Details


Os.54829.1.S1_at

Description gb:AK106851.1
DB_XREF= gi:32992060
TID=Os.54829.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A12, full insert sequence.
FL= gb:AK106851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0222011/11Endoglucanase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02190OsAffx.5680.1.S1_at10/118+732945..739124expressed protein
LOC_Os08g02190Os.27946.1.S1_at1/118+732945..739124expressed protein
LOC_Os08g02200Os.51266.1.S1_at11/118+740152..740787expressed protein
LOC_Os08g02210Os.10410.1.S1_at11/118+744994..746908expressed protein
LOC_Os08g02220Os.54829.1.S1_at11/118+756868..758778Endoglucanase 1 precursor, putative, expressed
LOC_Os08g02230Os.27067.2.A1_at11/118+761993..764528plant-specific FAD-dependent oxidoreductase family protein, expressed
LOC_Os08g02240OsAffx.29663.1.S1_at9/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240OsAffx.29218.1.S1_s_at8/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240OsAffx.380.1.S1_at3/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240Os.27345.1.S1_at1/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240OsAffx.13325.1.S1_at1/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240OsAffx.2057.3.S1_at1/118+778130..784137retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0042547biological_processcell wall modification during multidimensional cell growth
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54829.1.S1_at--462--1891Chr08:758142..758166 (25 bp)
ACGTTCCTGATGCTGGCGTACGCCA
LOC_Os08g02220
Os.54829.1.S1_at--403--8851Chr08:758149..758173 (25 bp)
TGATGCTGGCGTACGCCAAGTACCT
LOC_Os08g02220
Os.54829.1.S1_at--651--2831Chr08:758166..758190 (25 bp)
AAGTACCTCCGGTCGAGCGGCGCCA
LOC_Os08g02220
Os.54829.1.S1_at--782--4471Chr08:758580..758604 (25 bp)
GCCGGAACCACCAAGTAGCCATTAG
LOC_Os08g02220
Os.54829.1.S1_at--623--1692Chr08:758596..758620 (25 bp)
AGCCATTAGTGAGAGTGTGAGTGAC
LOC_Os08g02220
Os.54829.1.S1_at--928--4611Chr08:758637..758661 (25 bp)
GCGAGGCCAGTGAGATGAGCTCCCC
LOC_Os08g02220
Os.54829.1.S1_at--587--4411Chr08:758663..758687 (25 bp)
GCCACGCTGTATCGTTCGTTGACTT
LOC_Os08g02220
Os.54829.1.S1_at--153--6891Chr08:758671..758695 (25 bp)
GTATCGTTCGTTGACTTTGTCGTGT
LOC_Os08g02220
Os.54829.1.S1_at--1139--5671Chr08:758683..758707 (25 bp)
GACTTTGTCGTGTATTCGACGCAAC
LOC_Os08g02220
Os.54829.1.S1_at--732--6871Chr08:758694..758718 (25 bp)
GTATTCGACGCAACAAACAGTATTT
LOC_Os08g02220
Os.54829.1.S1_at--14--2491Chr08:758709..758733 (25 bp)
AACAGTATTTGCACGGAGTACGTAC
LOC_Os08g02220
Target Sequence 
ACGTTCCTGATGCTGGCGTACGCCAAGTACCTCCGGTCGAGCGGCGCCACCGCGTCGTGCGGCGACGGCGGCGGCGGAGC
GAGGGGGGAGGTGTCGGCGGCGGAGCTGGTGGCGGTGGCGAAGCGGCAGGTGGACTACATCCTGGGGAAGAACCCGGCGG
GGATGTCGTACATGGTGGGGTTCGGGTGCAGGTACCCGAGGCGGGCGCACCACCGCGGCGCGTCCATGCCGTCGGTGCGC
GCCCACCCGGGGCGGATCTCCTGCGACGCCGGCTTCGGCTACCTCCACTCCGGCGAGCCCAACCCGAACGTGCTCGTCGG
CGCCGTCGTCGGCGGGCCGGACAGCCGCGACGCCTTTGCCGACGACCGCGGCAACTTCGCGCAGTCGGAGCCGGCCACCT
ACATCAACGCGCCGCTCGTCGGCGCGCTCGCCTACTTCGCCGGAACCACCAAGTAGCCATTAGTGAGAGTGTGAGTGACG
TGGCAGTGTGGGAGCGCGAGGCCAGTGAGATGAGCTCCCCCGCCACGCTGTATCGTTCGTTGACTTTGTCGTGTATTCGA
CGCAACAAACAGTATTTGCACGGAGTACGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis