Browse Element(s) Details


Os.27067.2.A1_at

Description gb:AK105866.1
DB_XREF= gi:32991075
TID=Os.27067.2
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A07, full insert sequence.
FL= gb:AK105866.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0223011/11plant-specific FAD-dependent oxidoreductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02190OsAffx.5680.1.S1_at10/118+732945..739124expressed protein
LOC_Os08g02190Os.27946.1.S1_at1/118+732945..739124expressed protein
LOC_Os08g02200Os.51266.1.S1_at11/118+740152..740787expressed protein
LOC_Os08g02210Os.10410.1.S1_at11/118+744994..746908expressed protein
LOC_Os08g02220Os.54829.1.S1_at11/118+756868..758778Endoglucanase 1 precursor, putative, expressed
LOC_Os08g02230Os.27067.2.A1_at11/118+761993..764528plant-specific FAD-dependent oxidoreductase family protein, expressed
LOC_Os08g02240OsAffx.29663.1.S1_at9/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240OsAffx.29218.1.S1_s_at8/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240OsAffx.380.1.S1_at3/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240Os.27345.1.S1_at1/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240OsAffx.13325.1.S1_at1/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240OsAffx.2057.3.S1_at1/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02250Os.8696.1.S1_x_at11/118+788844..791243IQ calmodulin-binding motif family protein, expressed
LOC_Os08g02250Os.8696.1.S1_at11/118+788844..791243IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27067.2.A1_at--567--971Chr08:762513..762537 (25 bp)
AGGAGAGATACGACCCCGACGGCAT
LOC_Os08g02230
Os.27067.2.A1_at--612--2671Chr08:762427..762451 (25 bp)
AAGCGCTGCGCCATTGAAGGCCTCT
LOC_Os08g02230
Os.27067.2.A1_at--979--10711Chr08:762414..762438 (25 bp)
TTGAAGGCCTCTGCGTCTGCTCCGA
LOC_Os08g02230
Os.27067.2.A1_at--920--2671Chr08:762343..762367 (25 bp)
AAGCTTTTCAAGGAGGCCAGGGTCT
LOC_Os08g02230
Os.27067.2.A1_at--941--8411Chr08:762329..762353 (25 bp)
GGCCAGGGTCTGCTCCAAAGACAAA
LOC_Os08g02230
Os.27067.2.A1_at--694--6291Chr08:762289..762313 (25 bp)
GATGATGATCTCCTCGATGAATTGT
LOC_Os08g02230
Os.27067.2.A1_at--297--9752Chr11:24634507..24634741 (25 bp)
TAATACATGCATGGCTAGCTAGCTC
NONE
Os.27067.2.A1_at--475--6991Chr08:762147..762171 (25 bp)
GTACGAAATAATCCACCTGCTACAT
LOC_Os08g02230
Os.27067.2.A1_at--88--1771Chr08:762133..762157 (25 bp)
ACCTGCTACATTGGGATGGCGTATG
LOC_Os08g02230
Os.27067.2.A1_at--496--31Chr08:762087..762111 (25 bp)
ATTGGTTGGCGTGATTTGATTTTGA
LOC_Os08g02230
Os.27067.2.A1_at--660--8111Chr08:762041..762065 (25 bp)
GGACAGTGTCAGTGGTTTGGAAAAT
LOC_Os08g02230
Target Sequence 
AGGAGAGATACGACCCCGACGGCATCTTCTCCAGCGAGTGGAGCGACCAGGTGCTGGGCATCAGCGGGAGCCCCAACATC
GTCGACAAGCGCTGCGCCATTGAAGGCCTCTGCGTCTGCTCCGACGACTCCCACTGCGCGCCGGAGCTCGGCTACTTNTG
CCGCCCGGGGAAGCTTTTCAAGGAGGCCAGGGTCTGCTCCAAAGACAAATCCGCCGCCGCCGGTGATGATGATCTCCTCG
ATGAATTGTGATTTATTATTATTTGATCGAATTTCGTTCAAGTCAAATAATACATGCATGGCTAGCTAGCTCTGCATGAA
ATGAAATGCAAATTTATATTTAATTAATCAAGAAAAAGATAAGCACGTACGAAATAATCCACCTGCTACATTGGGATGGC
GTATGTGGTAGGTAGTGATACTGTAAATTGGTTGGCGTGATTTGATTTTGAGATGTAATGATGCTTTAATGTGGACAGTG
TCAGTGGTTTGGAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27067.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis