Browse Element(s) Details


Os.8696.1.S1_x_at

Description gb:AK100461.1
DB_XREF= gi:32985670
TID=Os.8696.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8696 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091O18, full insert sequence.
FL= gb:AK100461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0225011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02230Os.27067.2.A1_at11/118+761993..764528plant-specific FAD-dependent oxidoreductase family protein, expressed
LOC_Os08g02240OsAffx.29663.1.S1_at9/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240OsAffx.29218.1.S1_s_at8/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240OsAffx.380.1.S1_at3/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240Os.27345.1.S1_at1/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240OsAffx.13325.1.S1_at1/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02240OsAffx.2057.3.S1_at1/118+778130..784137retrotransposon protein, putative, unclassified
LOC_Os08g02250Os.8696.1.S1_x_at11/118+788844..791243IQ calmodulin-binding motif family protein, expressed
LOC_Os08g02250Os.8696.1.S1_at11/118+788844..791243IQ calmodulin-binding motif family protein, expressed
LOC_Os08g02260NANA8+791835..792398hypothetical protein
LOC_Os08g02270OsAffx.5681.1.S1_at11/118+813377..814284hypothetical protein
LOC_Os08g02280OsAffx.5682.1.S1_at11/118+815510..816064hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8696.1.S1_x_at--109--571Chr08:789639..789663 (25 bp)
ATCCAGGTGCGGTCGGCAAGCCCGC
LOC_Os08g02250
Os.8696.1.S1_x_at--854--4251Chr08:789444..789468 (25 bp)
CCGGAGCGCGACAGGATGTCATTCG
LOC_Os08g02250
Os.8696.1.S1_x_at--1147--5351Chr08:789394..789418 (25 bp)
GAAGAAGCGGCTGTCGTTCCCCGTC
LOC_Os08g02250
Os.8696.1.S1_x_at--915--9131Chr08:789335..789359 (25 bp)
TGCGGAGCCCGAGCTTCAAGAGCGC
LOC_Os08g02250
Os.8696.1.S1_x_at--642--6691Chr08:789301..789325 (25 bp)
GTTCTCGTCGGAGCAGCGGTCGAAC
LOC_Os08g02250
Os.8696.1.S1_x_at--385--1511Chr08:789290..789314 (25 bp)
AGCAGCGGTCGAACGTGTCGTCGTC
LOC_Os08g02250
Os.8696.1.S1_x_at--1073--2571Chr08:789279..789303 (25 bp)
AACGTGTCGTCGTCCTGCGCGGAGA
LOC_Os08g02250
Os.8696.1.S1_x_at--271--7611Chr08:789245..789269 (25 bp)
GGGACGTGGTCTCTCCGTCATCCAC
LOC_Os08g02250
Os.8696.1.S1_x_at--83--7431Chr08:789171..789195 (25 bp)
GTGTTCGATGTAATGCCCGTGAGGT
LOC_Os08g02250
Os.8696.1.S1_x_at--378--4191Chr08:789156..789180 (25 bp)
CCCGTGAGGTGTTCGCTGTAATGTT
LOC_Os08g02250
Os.8696.1.S1_x_at--899--10311Chr08:789125..789149 (25 bp)
TTTACCACGACCTCGTAATTCATCC
LOC_Os08g02250
Target Sequence 
ATCCAGGTGCGGTCGGCAAGCCCGCGCGTGGAGCGCGGCGGCGGCGGGGGAGGGAGCTACACCCCGAGCCTTCACTCGCA
CCGCCACCACGCGTCGTCGGGCGGCGCGGCGGCGGTGCCGGACTACATGGCGGCGACGGAGTCCGCCAAGGCGCGGGTGC
GTTCCCAGAGCGCGCCGCGGCAGCGCCCGGCGACGCCGGAGCGCGACAGGATGTCATTCGGCGGCGGCGGCGGCGGCGGC
GGAGCGAAGAAGCGGCTGTCGTTCCCCGTCCCNATCGACCCGTACNGNGNGTACGCGCAGANGCCTGCGGAGCCCGAGCT
TCAAGAGCGCGGCGGGGAGGTTCTCGTCGGAGCAGCGGTCGAACGTGTCGTCGTCCTGCGCGGAGAGCCTCGGCGGGGAC
GTGGTCTCTCCGTCATCCACCACCGACCTCCNGCCGCTGGCTTCGTTAANTCCGCCGCCGGCGTCGGCGAGGTGTTCGAT
GTAATGCCCGTGAGGTGTTCGCTGTAATGTTTTTTTTTTTACCACGACCTCGTAATTCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8696.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis