Browse Element(s) Details


OsAffx.16786.1.S1_at

Description tigr:9636.m00116
TID=OsAffx.16786.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NAM (no apical meristem)-like protein (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0216011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02130Os.6320.1.S1_at10/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130Os.54405.1.S1_at2/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.21108.1.S1_x_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.8723.1.S1_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02140Os.10262.1.S1_at11/118+709296..713823U-box domain containing protein, expressed
LOC_Os08g02150Os.57291.1.S1_at7/118+714171..715518expressed protein
LOC_Os08g02160OsAffx.16786.1.S1_at11/118+725881..728248No apical meristem protein, expressed
LOC_Os08g02170Os.51205.1.S1_at11/118+728293..729317expressed protein
LOC_Os08g02180Os.52993.1.S1_at11/118+728348..728904expressed protein
LOC_Os08g02190OsAffx.5680.1.S1_at10/118+732945..739124expressed protein
LOC_Os08g02190Os.27946.1.S1_at1/118+732945..739124expressed protein
LOC_Os08g02200Os.51266.1.S1_at11/118+740152..740787expressed protein
LOC_Os08g02210Os.10410.1.S1_at11/118+744994..746908expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16786.1.S1_at--639--10111Chr08:726964..726988 (25 bp)
TATGTACTGCATATGCTATTGGCAC
LOC_Os08g02160
OsAffx.16786.1.S1_at--206--271Chr08:726974..726998 (25 bp)
ATATGCTATTGGCACGTCTTGTCTC
LOC_Os08g02160
OsAffx.16786.1.S1_at--879--10231Chr08:726980..727004 (25 bp)
TATTGGCACGTCTTGTCTCTCAGCT
LOC_Os08g02160
OsAffx.16786.1.S1_at--157--4031Chr08:726988..727012 (25 bp)
CGTCTTGTCTCTCAGCTGGTGATGA
LOC_Os08g02160
OsAffx.16786.1.S1_at--855--5591Chr08:727011..727035 (25 bp)
GAAATTAAAGTACACACCATGCGAA
LOC_Os08g02160
OsAffx.16786.1.S1_at--489--2191Chr08:727022..727046 (25 bp)
ACACACCATGCGAAAATTGTATGTA
LOC_Os08g02160
OsAffx.16786.1.S1_at--932--4971Chr08:728017..728041 (25 bp)
GCATCGACGGCCATGGAGCTTGCAG
LOC_Os08g02160
OsAffx.16786.1.S1_at--230--531Chr08:728019..728043 (25 bp)
ATCGACGGCCATGGAGCTTGCAGCG
LOC_Os08g02160
OsAffx.16786.1.S1_at--924--8271Chr08:728049..728073 (25 bp)
GGCATTCCACCTCGTCTCGTGTTTG
LOC_Os08g02160
OsAffx.16786.1.S1_at--217--9431Chr08:728065..728089 (25 bp)
TCGTGTTTGCTCTCGCGTTTGCCAT
LOC_Os08g02160
OsAffx.16786.1.S1_at--626--3791Chr08:728076..728100 (25 bp)
CTCGCGTTTGCCATCGGTGGTACGG
LOC_Os08g02160
Target Sequence 
TATGTACTGCATATGCTATTGGCACGTCTTGTCTCTCAGCTGGTGATGAAATTAAAGTACACACCATGCGAAAATTGTAT
GTAGAGGAAATTTCGCTGTGTCGAGTCTACAAACGCCCAGGAATCGAAGACAACTTCCACCTCACCGGCACAACCACTAA
ATCCTCCGGCTCAAAGGCGGCGGCGGCGATGGGCAAGAAGCACGCCGCCGCGAACCGGACGTCATCGACGGCGGCGGCTG
CGGCGCCCCGCCTCGCCCCGATGTTCGACGGCGGCGGCGGTGGCCAGGCACGGGCCACGGCATCGGCGGCCAAGAAGCAG
GCGGCGACGGCGGCGGCTGCCAAGCGCCGCCATCCGCGTCGGCATCGACGGCCATGGAGCTTGCAGCGGCGGCGGCATTC
CACCTCGTCTCGTGTTTGCTCTCGCGTTTGCCATCGGTGGTACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis