Browse Element(s) Details


Os.11719.1.S1_at

Description gb:AK105973.1
DB_XREF= gi:32991182
TID=Os.11719.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11719 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C96778(C10671),D22278(C10671)~unknown protein (P0453E03.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F04, full insert sequence.
FL= gb:AK102682.1 gb:AK068814.1 gb:AK105973.1 gb:AK107202.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4667011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46630Os.34191.1.S1_at11/117+27863332..27866538adenosine/AMP deaminase family protein, putative, expressed
LOC_Os07g46640Os.17163.1.S1_at10/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46640OsAffx.20501.1.S1_at1/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46650OsAffx.1524.1.S1_at11/117+27877952..27880702transposon protein, putative, Mutator sub-class
LOC_Os07g46660Os.10037.1.S1_at11/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.6243.1.S1_at2/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.44608.1.S1_at1/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46670Os.11719.1.S1_at11/117+27887725..27889622expressed protein
LOC_Os07g46670Os.11719.1.S2_at11/117+27887725..27889622expressed protein
LOC_Os07g46680OsAffx.28871.1.S1_at1/117+27898684..27899599hypothetical protein
LOC_Os07g46690Os.27554.1.S1_x_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46690OsAffx.5653.1.S1_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46700Os.25027.1.S1_a_at11/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_x_at10/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_at8/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.11734.1.S1_a_at1/117+27913627..27919498RNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009617biological_processresponse to bacteria
GO:0009644biological_processresponse to high light intensity
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11719.1.S1_at--503--4771Chr07:27888870..27888894 (25 bp)
GCTGCTGTCTAGTGTATAACCTTGG
LOC_Os07g46670
Os.11719.1.S1_at--701--1331Chr07:27888838..27888862 (25 bp)
AGAGTTTAGTCTCTCTGCTTTTCTT
LOC_Os07g46670
Os.11719.1.S1_at--274--3171Chr07:27888778..27888802 (25 bp)
AATTGCAGCTTTCTGGTGCTGCATC
LOC_Os07g46670
Os.11719.1.S1_at--316--7311Chr07:27888763..27888787 (25 bp)
GTGCTGCATCCCTTGTAGTAGTAAA
LOC_Os07g46670
Os.11719.1.S1_at--236--7051Chr07:27888743..27888767 (25 bp)
GTAAAGCAGCTTCTGTTCAGTTTCA
LOC_Os07g46670
Os.11719.1.S1_at--299--6751Chr07:27888729..27888753 (25 bp)
GTTCAGTTTCAGGTGCATCATCTAA
LOC_Os07g46670
Os.11719.1.S1_at--137--6971Chr07:27888654..27888678 (25 bp)
GTACTAATGATTCTACTACCGCCCT
LOC_Os07g46670
Os.11719.1.S1_at--220--1551Chr07:27888640..27888664 (25 bp)
ACTACCGCCCTTGTTAATGTTGGAT
LOC_Os07g46670
Os.11719.1.S1_at--1124--2511Chr07:27888576..27888600 (25 bp)
AACTTCTGATTATTCCTTTGCTCTC
LOC_Os07g46670
Os.11719.1.S1_at--97--4311Chr07:27888562..27888586 (25 bp)
CCTTTGCTCTCTTCAGAATCTGGTA
LOC_Os07g46670
Os.11719.1.S1_at--766--7811Chr07:27888541..27888565 (25 bp)
GGTAGAAACCTGCTCTTTTGTTGTC
LOC_Os07g46670
Target Sequence 
GCTGCTGTCTAGTGTATAACCTTGGAGTTTTCAGAGTTTAGTCTCTCTGCTTTTCTTCACTGTGTATAAAAACTGAAAAA
AAAAGGGGGNAAAATTGCAGCTTTCTGGTGCTGCATCCCTTGTAGTAGTAAAGCAGCTTCTGTTCAGTTTCAGGTGCATC
ATCTAAAATGTGTTAGAAAAAAAAAAGCAAAAATAGAGAGTGATGTAGAATCATGTGTACTAATGATTCTACTACCGCCC
TTGTTAATGTTGGATATATTAAGATGGCAAGCAGTCTAATGTTTAGAATCTTTCAACTTCTGATTATTCCTTTGCTCTCT
TCAGAATCTGGTAGAAACCTGCTCTTTTGTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis