Browse Element(s) Details


Os.25027.3.S1_x_at

Description gb:NM_186033.1
DB_XREF= gi:34899151
GEN=P0453E03.8
TID=Os.25027.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25027 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) RNA-binding protein-like~contains EST C28606(C61758) (P0453E03.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) RNA-binding protein-like~contains EST C28606(C61758) (P0453E03.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4670010/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46670Os.11719.1.S1_at11/117+27887725..27889622expressed protein
LOC_Os07g46670Os.11719.1.S2_at11/117+27887725..27889622expressed protein
LOC_Os07g46680OsAffx.28871.1.S1_at1/117+27898684..27899599hypothetical protein
LOC_Os07g46690Os.27554.1.S1_x_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46690OsAffx.5653.1.S1_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46700Os.25027.1.S1_a_at11/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_x_at10/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_at8/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.11734.1.S1_a_at1/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46710Os.10460.1.S1_at11/117+27920549..27922918expressed protein
LOC_Os07g46720Os.12575.2.S1_at11/117+27924479..27928960Nucleolar protein Nop56, putative, expressed
LOC_Os07g46730Os.12575.1.S1_at11/117+27927822..27931075expressed protein
LOC_Os07g46740OsAffx.28933.1.S1_x_at2/117+27934989..27935563hypothetical protein
LOC_Os07g46740OsAffx.19886.1.S1_at1/117+27934989..27935563hypothetical protein
LOC_Os07g46750Os.138.1.S1_at11/117+27940062..27942618EF-1 guanine nucleotide exchange domain containing protein, expressed
LOC_Os07g46760Os.27317.1.S1_at11/117+27943484..27946410TBP-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25027.3.S1_x_at--684--7131Chr07:27917108..27917132 (25 bp)
GTCATATTTCCTTCTTTGATGCAAC
LOC_Os07g46700
Os.25027.3.S1_x_at--828--6731Chr07:27916925..27916949 (25 bp)
GTTCTTCCAACTTGTAGCCATGCTA
LOC_Os07g46700
Os.25027.3.S1_x_at--380--111Chr07:27915080..27915104 (25 bp)
ATTCTGCCGCGATAGTCTCAAGAGA
LOC_Os07g46700
Os.25027.3.S1_x_at--551--5471Chr07:27915053..27915077 (25 bp)
GAACTCGGCCGACCTATGGATATAT
LOC_Os07g46700
Os.25027.3.S1_x_at--783--3651Chr07:27914980..27915004 (25 bp)
CTTAGGCGGCTCTTCATGTACATAG
LOC_Os07g46700
Os.25027.3.S1_x_at--388--1911Chr07:27914944..27914968 (25 bp)
ACGGTCATCCCTGAAACTGTTTTTG
LOC_Os07g46700
Os.25027.3.S1_x_at--228--6831Chr07:27914864..27914941 (25 bp)
GTTTACGATTCCCACTGCTGTAGAA
LOC_Os07g46700
Os.25027.3.S1_x_at--976--3171Chr07:27914840..27914864 (25 bp)
AATTGTGGAGCCCTTGGTGTTCATG
LOC_Os07g46700
Os.25027.3.S1_x_at--307--1451NONE
AGAAGCTTGGGTTACTGGGCTCAGC
NONE
Os.25027.3.S1_x_at--832--10491Chr07:27913972..27913996 (25 bp)
TTCAGAACACTTCAGAGGGCTCCCG
LOC_Os07g46700
Os.25027.3.S1_x_at--311--6131Chr07:27913958..27913982 (25 bp)
GAGGGCTCCCGGAATGGTCCAGCTT
LOC_Os07g46700
Target Sequence 
GTCATATTTCCTTCTTTGATGCAACTACATGAAGGGATCAATGAAGTGGAAGACAAGAAACAAAAGGCAATCTGTATAGA
AAGATATAGAAGACGAGATGAAGATCAGAAAATGGTGATTTCAGAGATTGATGATAACATCGAGGAGGAATGTGGCATAT
GTATGGAGATAAATGGCAAAGTAGTTCTTCCAACTTGTAGCCATGCTATGTGCATTAAATGCTACCGTGACAGATCAAGA
TCCCAGTCTTGTCCATTCTGCCGCGATAGTCTCAAGAGAGTGAACTCGGCCGACCTATGGATATATACAGATAACAGGGA
CATAGTGGACATAGCGACGGTCCGAAAGGAAAATCTTAGGCGGCTCTTCATGTACATAGACAAGTTGCCCACGGTCATCC
CTGAAACTGTTTTTGACGTTTACGATTCCCACTGCTGTAGAAATTGTGGAGCCCTTGGTGTTCATGCTGCCCCGCTTGTA
GAAGCTTGGGTTACTGGGCTCAGCTTCAGAACACTTCAGAGGGCTCCCGGAATGGTCCAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25027.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis