Browse Element(s) Details


Os.27554.1.S1_x_at

Description gb:NM_186025.1
DB_XREF= gi:34899135
GEN=P0496C02.34
TID=Os.27554.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27554 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 5, At5g12400 (P0453E03.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0496C02.34 (P0496C02.34), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4669011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46650OsAffx.1524.1.S1_at11/117+27877952..27880702transposon protein, putative, Mutator sub-class
LOC_Os07g46660Os.10037.1.S1_at11/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.6243.1.S1_at2/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.44608.1.S1_at1/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46670Os.11719.1.S1_at11/117+27887725..27889622expressed protein
LOC_Os07g46670Os.11719.1.S2_at11/117+27887725..27889622expressed protein
LOC_Os07g46680OsAffx.28871.1.S1_at1/117+27898684..27899599hypothetical protein
LOC_Os07g46690Os.27554.1.S1_x_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46690OsAffx.5653.1.S1_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46700Os.25027.1.S1_a_at11/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_x_at10/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_at8/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.11734.1.S1_a_at1/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46710Os.10460.1.S1_at11/117+27920549..27922918expressed protein
LOC_Os07g46720Os.12575.2.S1_at11/117+27924479..27928960Nucleolar protein Nop56, putative, expressed
LOC_Os07g46730Os.12575.1.S1_at11/117+27927822..27931075expressed protein
LOC_Os07g46740OsAffx.28933.1.S1_x_at2/117+27934989..27935563hypothetical protein
LOC_Os07g46740OsAffx.19886.1.S1_at1/117+27934989..27935563hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27554.1.S1_x_at--557--8071Chr07:27903217..27903241 (25 bp)
GGAGCTTGATAGTACTAGCACTGAG
LOC_Os07g46690
Os.27554.1.S1_x_at--353--8631Chr07:27903082..27903106 (25 bp)
TGGTGGAGAAGCACACTGTCTGCAT
LOC_Os07g46690
Os.27554.1.S1_x_at--379--3871Chr07:27903067..27903091 (25 bp)
CTGTCTGCATGAGCTCAACAACCAT
LOC_Os07g46690
Os.27554.1.S1_x_at--109--1171Chr07:27903021..27903045 (25 bp)
AGTCTTGACAATAACCTGGGTGAAC
LOC_Os07g46690
Os.27554.1.S1_x_at--68--7371Chr07:27903002..27903026 (25 bp)
GTGAACTCGATAATCAAGACTGCCA
LOC_Os07g46690
Os.27554.1.S1_x_at--1022--3051Chr07:27902937..27902961 (25 bp)
AATCATCGAAGTTCACAAGAGCTTG
LOC_Os07g46690
Os.27554.1.S1_x_at--627--671Chr07:27902843..27902867 (25 bp)
ATGAACACTCTGCTGCAGTGACGCA
LOC_Os07g46690
Os.27554.1.S1_x_at--314--6811Chr07:27902810..27902834 (25 bp)
GTTTTCTTGATGACCCCTTCAACAT
LOC_Os07g46690
Os.27554.1.S1_x_at--82--8211Chr07:27902734..27902758 (25 bp)
GGAATCTATTCCTTTGCAAACCAAG
LOC_Os07g46690
Os.27554.1.S1_x_at--572--2631Chr07:27902705..27902729 (25 bp)
AACCTGAGGAGAATCCTGTTCCTGC
LOC_Os07g46690
Os.27554.1.S1_x_at--193--5271Chr07:27902695..27902719 (25 bp)
GAATCCTGTTCCTGCTGATCATGAC
LOC_Os07g46690
Target Sequence 
GGAGCTTGATAGTACTAGCACTGAGAAAGAGCTTGGTGATCATAACAAGATAGAAGAGTTTGATGTCAATATGGAAATGT
TCTTCAATCTTAACAATACGAAGGAGCTTGATAGTACTGGAGAAAGCATATGTGCTGGTGGAGAAGCACACTGTCTGCAT
GAGCTCAACAACCATGAAATTCTTAAGGAGTGTCATAGTCTTGACAATAACCTGGGTGAACTCGATAATCAAGACTGCCA
AAAAGAGTGTCATAATCAAAATAGTCTAAAAGAGCTTGAAAATCATCGAAGTTCACAAGAGCTTGATAGTCATAAAAGTC
CAGAAGAGCTTGATAATATTATAAGTCNNNANGAGCTTGACTGTACTGAAAATAATGAACACTCTGCTGCAGTGACGCAN
NCGGATNGGTTTTCTTGATGACCCCTTCAACATTAGGATATCTGACAAAGGACTGATCATAGCATCAGAAAATGGTAAGA
TAAAGGAATCTATTCCTTTGCAAACCAAGAATAAACCTGAGGAGAATCCTGTTCCTGCTGATCATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27554.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis