Browse Element(s) Details


Os.12575.1.S1_at

Description gb:AK069221.1
DB_XREF= gi:32979245
TID=Os.12575.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome1, At1g01970 (P0453E03.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018E21, full insert sequence.
FL= gb:AK069221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4673011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46690Os.27554.1.S1_x_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46690OsAffx.5653.1.S1_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46700Os.25027.1.S1_a_at11/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_x_at10/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_at8/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.11734.1.S1_a_at1/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46710Os.10460.1.S1_at11/117+27920549..27922918expressed protein
LOC_Os07g46720Os.12575.2.S1_at11/117+27924479..27928960Nucleolar protein Nop56, putative, expressed
LOC_Os07g46730Os.12575.1.S1_at11/117+27927822..27931075expressed protein
LOC_Os07g46740OsAffx.28933.1.S1_x_at2/117+27934989..27935563hypothetical protein
LOC_Os07g46740OsAffx.19886.1.S1_at1/117+27934989..27935563hypothetical protein
LOC_Os07g46750Os.138.1.S1_at11/117+27940062..27942618EF-1 guanine nucleotide exchange domain containing protein, expressed
LOC_Os07g46760Os.27317.1.S1_at11/117+27943484..27946410TBP-binding protein, putative, expressed
LOC_Os07g46770Os.31724.1.S1_at11/117+27947234..27948959pentatricopeptide, putative, expressed
LOC_Os07g46780Os.21410.2.S1_x_at11/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46780Os.21410.1.S1_at11/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46780OsAffx.21636.1.S1_x_at2/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12575.1.S1_at--642--8071Chr07:27928587..27928611 (25 bp)
GGAGCACTGGCATTTTTGACAGAGC
LOC_Os07g46730
Os.12575.1.S1_at--287--1451Chr07:27928534..27928558 (25 bp)
AGAACCTTCTCAGCTGCTTGCAGGA
LOC_Os07g46730
Os.12575.1.S1_at--1131--6991Chr07:27928470..27928494 (25 bp)
GTACTGAAGGACCTCGCTGTAGACA
LOC_Os07g46730
Os.12575.1.S1_at--296--8191Chr07:27928421..27928445 (25 bp)
GGAAGAAGAACCTCGCATCAGACAG
LOC_Os07g46730
Os.12575.1.S1_at--462--4971Chr07:27928356..27928380 (25 bp)
GCATCATCTCTGCAACGCAAGTGAT
LOC_Os07g46730
Os.12575.1.S1_at--1121--2191Chr07:27928317..27928341 (25 bp)
ACAAACCTGCAACATTCTTGACTGG
LOC_Os07g46730
Os.12575.1.S1_at--1016--771Chr07:27928282..27928306 (25 bp)
ATGTGCTGCCCCATGAGTCAGATTA
LOC_Os07g46730
Os.12575.1.S1_at--1024--10811Chr07:27928235..27928259 (25 bp)
TTGGGATTTCACAGGCGATACTACG
LOC_Os07g46730
Os.12575.1.S1_at--994--5511Chr07:27928182..27928206 (25 bp)
GAAAAGGCTCCATCCAAGGTGATAT
LOC_Os07g46730
Os.12575.1.S1_at--458--631Chr07:27928159..27928183 (25 bp)
ATGCATCACATGTAACTCTTAGAGG
LOC_Os07g46730
Os.12575.1.S1_at--975--5931Chr07:27928066..27928090 (25 bp)
GAGCAGCAATGTTATCCTTGACACT
LOC_Os07g46730
Target Sequence 
GGAGCACTGGCATTTTTGACAGAGCTCGAGGAGAACGGCGTTATTATTGGCCAAGAACCTTCTCAGCTGCTTGCAGGATG
GCTCAGAAGACTTGGTGTTGTTCAAGAAGTCGAACAGGTACTGAAGGACCTCGCTGTAGACAGGAAGAACACCCTTGAAG
TAGACAGGAAGAAGAACCTCGCATCAGACAGGAAGATCAAGAGGAGGAGGAGCAAGAGCAAACGCAGTTTTGCATCATCT
CTGCAACGCAAGTGATTAGCTAGCTGCAACACAAACCTGCAACATTCTTGACTGGCAACAAGGACATGTGCTGCCCCATG
AGTCAGATTACAATGCAAACTTGTATACATGTTTGGGATTTCACAGGCGATACTACGATAAGATGGTAATTAAGCTATCT
GAAAAGAAAAGGCTCCATCCAAGGTGATATGCATCACATGTAACTCTTAGAGGAACCCCTAGGCCCTAACTAGAATTTTG
ATACCCAGAACAGCAGCAATGTTACAAGGAAGCTCTAACCAGAGCAGCAATGTTATCCTTGACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis