Browse Element(s) Details


Os.27317.1.S1_at

Description gb:AK103399.1
DB_XREF= gi:32988608
TID=Os.27317.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative TATA-binding protein-binding protein (P0453E03.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127O12, full insert sequence.
FL= gb:AK103399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4676011/11TBP-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46700Os.25027.1.S1_a_at11/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_x_at10/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_at8/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.11734.1.S1_a_at1/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46710Os.10460.1.S1_at11/117+27920549..27922918expressed protein
LOC_Os07g46720Os.12575.2.S1_at11/117+27924479..27928960Nucleolar protein Nop56, putative, expressed
LOC_Os07g46730Os.12575.1.S1_at11/117+27927822..27931075expressed protein
LOC_Os07g46740OsAffx.28933.1.S1_x_at2/117+27934989..27935563hypothetical protein
LOC_Os07g46740OsAffx.19886.1.S1_at1/117+27934989..27935563hypothetical protein
LOC_Os07g46750Os.138.1.S1_at11/117+27940062..27942618EF-1 guanine nucleotide exchange domain containing protein, expressed
LOC_Os07g46760Os.27317.1.S1_at11/117+27943484..27946410TBP-binding protein, putative, expressed
LOC_Os07g46770Os.31724.1.S1_at11/117+27947234..27948959pentatricopeptide, putative, expressed
LOC_Os07g46780Os.21410.2.S1_x_at11/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46780Os.21410.1.S1_at11/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46780OsAffx.21636.1.S1_x_at2/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46790Os.9980.2.S1_x_at10/117+27958851..27966077glycoside hydrolase family 77 protein, putative, expressed
LOC_Os07g46800NANA7+27968170..27968616hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0017025molecular_functionTATA-binding protein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27317.1.S1_at--234--2591Chr07:27945448..27945472 (25 bp)
AACGTGACCACTACTTGTCCAATGT
LOC_Os07g46760
Os.27317.1.S1_at--704--10791Chr07:27945462..27945486 (25 bp)
TTGTCCAATGTCGAGAAGTCCCGTA
LOC_Os07g46760
Os.27317.1.S1_at--898--1131Chr07:27945478..27945502 (25 bp)
AGTCCCGTACGCTGAAACATATTCA
LOC_Os07g46760
Os.27317.1.S1_at--1065--1431Chr07:27945836..27945860 (25 bp)
AGAAGAAAAAATCGCTCGCCCAATT
LOC_Os07g46760
Os.27317.1.S1_at--230--8631Chr07:27946014..27946038 (25 bp)
TGGTGGTCCATAGTGAGTTCATTCA
LOC_Os07g46760
Os.27317.1.S1_at--563--3331Chr07:27946050..27946074 (25 bp)
CACCCCTTACCTTGGACTGGAGTAT
LOC_Os07g46760
Os.27317.1.S1_at--1129--6671Chr07:27946090..27946114 (25 bp)
GTTGCGCTGAGATAATCGTCTTCTT
LOC_Os07g46760
Os.27317.1.S1_at--469--4031Chr07:27946119..27946143 (25 bp)
CGTTCATCGTCTGCTTTATTTTTGT
LOC_Os07g46760
Os.27317.1.S1_at--208--2011Chr07:27946178..27946202 (25 bp)
ACTTCCTACCTTGAGTATCTTTTCG
LOC_Os07g46760
Os.27317.1.S1_at--905--7131Chr07:27946269..27946293 (25 bp)
GTCATATTATGCACCCCTGTTTTCT
LOC_Os07g46760
Os.27317.1.S1_at--242--2131Chr07:27946327..27946351 (25 bp)
ACAGAAGTACACTGCTCTAGCTTGA
LOC_Os07g46760
Target Sequence 
AACGTGACCACTACTTGTCCAATGTCGAGAAGTCCCGTACGCTGAAACATATTCAGGAGCGTAGGAAAAAGAAACAGAAG
ACGGAAGGAGCTGAATTCAATGAAGTCCGAGAAGAAAAAATCGCTCGCCCAATTCCGCAAAAGAAACCTGTTGAGGAGAC
AGACGCCAAAACTAAACCAAAGCTTCCGAAAGACATTTTAGCCGGAGTATTTGGTGGTCCATAGTGAGTTCATTCATGAA
TGCTTCCCACCCCTTACCTTGGACTGGAGTATAGCAAACTGAATGGAGTTGCGCTGAGATAATCGTCTTCTTCATCCGTT
CATCGTCTGCTTTATTTTTGTAGATTAGGTCATGGTCTTTAGTAACTTGGTTCCTACTTCCTACCTTGAGTATCTTTTCG
TATTTATGCTGTGTTAGGGAAGGTTTTGGGACCTGACGATGAATGTATGATTGGGGTATTGTCAGTGTCATATTATGCAC
CCCTGTTTTCTCAGCGATCATGGCTGTAATACTGAAACAGAGTTACAGAAGTACACTGCTCTAGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis