Browse Element(s) Details


Os.21410.1.S1_at

Description gb:AK066067.1
DB_XREF= gi:32976085
TID=Os.21410.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative MtrTnaBTyrO permease family protein (P0453E03.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055M05, full insert sequence.
FL= gb:AK066067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4678011/11tryptophan/tyrosine permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46720Os.12575.2.S1_at11/117+27924479..27928960Nucleolar protein Nop56, putative, expressed
LOC_Os07g46730Os.12575.1.S1_at11/117+27927822..27931075expressed protein
LOC_Os07g46740OsAffx.28933.1.S1_x_at2/117+27934989..27935563hypothetical protein
LOC_Os07g46740OsAffx.19886.1.S1_at1/117+27934989..27935563hypothetical protein
LOC_Os07g46750Os.138.1.S1_at11/117+27940062..27942618EF-1 guanine nucleotide exchange domain containing protein, expressed
LOC_Os07g46760Os.27317.1.S1_at11/117+27943484..27946410TBP-binding protein, putative, expressed
LOC_Os07g46770Os.31724.1.S1_at11/117+27947234..27948959pentatricopeptide, putative, expressed
LOC_Os07g46780Os.21410.2.S1_x_at11/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46780Os.21410.1.S1_at11/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46780OsAffx.21636.1.S1_x_at2/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46790Os.9980.2.S1_x_at10/117+27958851..27966077glycoside hydrolase family 77 protein, putative, expressed
LOC_Os07g46800NANA7+27968170..27968616hypothetical protein
LOC_Os07g46810OsAffx.16738.1.S1_at11/117+27980212..27981050expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0005302molecular_functionL-tyrosine transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21410.1.S1_at--411--5051Chr07:27949820..27949844 (25 bp)
GCAGCTCGTTTATTTATTCCAATTT
LOC_Os07g46780
Os.21410.1.S1_at--1096--5431Chr07:27949786..27949810 (25 bp)
GAACTTAGCACCTCATTTACGTGTT
LOC_Os07g46780
Os.21410.1.S1_at--239--7331Chr07:27949688..27949712 (25 bp)
GTGCTTATCTAGGTTCGTAGCCTGA
LOC_Os07g46780
Os.21410.1.S1_at--469--6971Chr07:27949672..27949696 (25 bp)
GTAGCCTGACCCAATCTGGGTTGAA
LOC_Os07g46780
Os.21410.1.S1_at--816--6551Chr07:27949635..27949659 (25 bp)
GATTAGATTTGCCACTTCAGTACAT
LOC_Os07g46780
Os.21410.1.S1_at--827--2971Chr07:27949554..27949578 (25 bp)
AATGTGCTCTTTTCAGTTCTAGTAC
LOC_Os07g46780
Os.21410.1.S1_at--489--3891Chr07:27949476..27949500 (25 bp)
CTGGAAGCTCCAGTACCACCAATAG
LOC_Os07g46780
Os.21410.1.S1_at--187--2251Chr07:27949440..27949464 (25 bp)
AAATTTACCCTCTCATTTGTCATGG
LOC_Os07g46780
Os.21410.1.S1_at--825--7271Chr07:27949412..27949436 (25 bp)
GTGCCTTGCTCGTAATTTTTTCAGA
LOC_Os07g46780
Os.21410.1.S1_at--26--671Chr07:27949303..27949327 (25 bp)
ATGCAATACCGCTGATAGCCTCGTA
LOC_Os07g46780
Os.21410.1.S1_at--555--1971Chr07:27949260..27949284 (25 bp)
ACTGAGCCAGCTTTTCTTAATTTAA
LOC_Os07g46780
Target Sequence 
GCAGCTCGTTTATTTATTCCAATTTGATATCTAAGAACTTAGCACCTCATTTACGTGTTTTTTCACCTAATCCTAAAAAG
GAAATAAAACAGTTTTACAGTTTATTGGTGGTGGGTAAATGAAAAAACGTGAGTGCTTATCTAGGTTCGTAGCCTGACCC
AATCTGGGTTGAAAGGGAACTCCTAGATTAGATTTGCCACTTCAGTACATTAAATTGATATCTTATCAGGAGAGAGGAAA
AAAAGGAAGAATGAACTGATATCTTGAATGTGCTCTTTTCAGTTCTAGTACTTTTTGGAGTTTTTCCAGCAGCTATGTCT
TGGTCAGAGAGGTACTCAGATGATCTGGAAGCTCCAGTACCACCAATAGTCCCGGGAGGAAAATTTACCCTCTCATTTGT
CATGGGGGGTGCCTTGCTCGTAATTTTTTCAGAGATTTTCAAGGACATAATGCAGTTGCAAGGACTACACTGACACTTAG
ATCTCCAATATAGATGCTTCAACAGATTTTCTTTTAAATGCAATACCGCTGATAGCCTCGTAATATTGTACATAGAATTG
ACTGAGCCAGCTTTTCTTAATTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis