Browse Element(s) Details


Os.138.1.S1_at

Description gb:D12821.1
DB_XREF= gi:218160
TID=Os.138.1
CNT=127
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.138 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for elongation factor 1 beta, complete cds.
PROD=elongation factor 1 beta
FL= gb:AK061761.1 gb:AK121942.1 gb:D12821.1 gb:AK098892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4675011/11EF-1 guanine nucleotide exchange domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46700Os.25027.1.S1_a_at11/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_x_at10/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_at8/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.11734.1.S1_a_at1/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46710Os.10460.1.S1_at11/117+27920549..27922918expressed protein
LOC_Os07g46720Os.12575.2.S1_at11/117+27924479..27928960Nucleolar protein Nop56, putative, expressed
LOC_Os07g46730Os.12575.1.S1_at11/117+27927822..27931075expressed protein
LOC_Os07g46740OsAffx.28933.1.S1_x_at2/117+27934989..27935563hypothetical protein
LOC_Os07g46740OsAffx.19886.1.S1_at1/117+27934989..27935563hypothetical protein
LOC_Os07g46750Os.138.1.S1_at11/117+27940062..27942618EF-1 guanine nucleotide exchange domain containing protein, expressed
LOC_Os07g46760Os.27317.1.S1_at11/117+27943484..27946410TBP-binding protein, putative, expressed
LOC_Os07g46770Os.31724.1.S1_at11/117+27947234..27948959pentatricopeptide, putative, expressed
LOC_Os07g46780Os.21410.2.S1_x_at11/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46780Os.21410.1.S1_at11/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46780OsAffx.21636.1.S1_x_at2/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46790Os.9980.2.S1_x_at10/117+27958851..27966077glycoside hydrolase family 77 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005853cellular_componenteukaryotic translation elongation factor 1 complex
GO:0003746molecular_functiontranslation elongation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.138.1.S1_at--491--5831Chr07:27941616..27941640 (25 bp)
GACCTGGATCTTTTTGGTGATGAGA
LOC_Os07g46750
Os.138.1.S1_at--793--8911Chr07:27941666..27941690 (25 bp)
TGAGCGTGCAGCTTCCAAGGCCTCT
LOC_Os07g46750
Os.138.1.S1_at--517--5551Chr07:27941843..27941863 (21 bp)
GAAAGCGGAAAATCATCTGTCCTGT
LOC_Os07g46750
Os.138.1.S1_at--145--3891Chr07:27941855..27941879 (25 bp)
CTGTCCTGTTGGATGTCAAACCATG
LOC_Os07g46750
Os.138.1.S1_at--815--1091Chr07:27941923..27941947 (25 bp)
AGTGTGCAGATGGAGGGTCTCACCT
LOC_Os07g46750
Os.138.1.S1_at--962--5671Chr07:27942110..27942134 (25 bp)
GACTTGGTGTCTGTGGATAGCCTTA
LOC_Os07g46750
Os.138.1.S1_at--609--6491Chr07:27942125..27942149 (25 bp)
GATAGCCTTATCGAAGAACATCTGA
LOC_Os07g46750
Os.138.1.S1_at--302--5491Chr07:27942140..27942164 (25 bp)
GAACATCTGACTGAAGAGCCGATCA
LOC_Os07g46750
Os.138.1.S1_at--873--3251Chr07:27942163..27942187 (25 bp)
CAACGAATTTGTCCAGAGCTGCGAC
LOC_Os07g46750
Os.138.1.S1_at--808--6111Chr07:27942331..27942355 (25 bp)
GAGTGATGCCTGTCATTAGTGCCTC
LOC_Os07g46750
Os.138.1.S1_at--820--4271Chr07:27942339..27942363 (25 bp)
CCTGTCATTAGTGCCTCTTATCTTT
LOC_Os07g46750
Target Sequence 
GACCTGGATCTTTTTGGTGATGAGACCGAGGAAGACAAGAAAGCAGCAGATGAGCGTGCAGCTTCCAAGGCCTCTTCAAA
GAAGAAAGAAAGCGGAAAATCATCTGTCCTGTTGGATGTCAAACCATGGGACGACGAGACTGATATGAAGAAGTTGGAGG
AGGCTGTCCGCAGTGTGCAGATGGAGGGTCTCACCTGGGGAGCATCAAAGCTTGTGCCTGTGGGTTACGGGATCAAGAAG
TTGCAGATCATGTTGACCATTGTTGATGACTTGGTGTCTGTGGATAGCCTTATCGAAGAACATCTGACTGAAGAGCCGAT
CAACGAATTTGTCCAGAGCTGCGACATCGTTGCGTTCAACAAGATTTAAAATATCAAAAGGGGATGTTGCTACTTATCCA
AAAACTGGGACTGGGACTGGTTGTTCTGGAAGCATTTTTCATCCCATCTTATTATCCTTCACAGAANTGCTAGTTTGAGT
TTATTTTTGAGTGATGCCTGTCATTAGTGCCTCTTATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis