Browse Element(s) Details


OsAffx.1524.1.S1_at

Description gb:NM_186019.1
DB_XREF= gi:34899123
GEN=P0496C02.28
TID=OsAffx.1524.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0496C02.28 (P0496C02.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4665011/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46620Os.44611.1.S1_at11/117+27849103..27853387expressed protein
LOC_Os07g46630Os.34191.1.S1_at11/117+27863332..27866538adenosine/AMP deaminase family protein, putative, expressed
LOC_Os07g46640Os.17163.1.S1_at10/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46640OsAffx.20501.1.S1_at1/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46650OsAffx.1524.1.S1_at11/117+27877952..27880702transposon protein, putative, Mutator sub-class
LOC_Os07g46660Os.10037.1.S1_at11/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.6243.1.S1_at2/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.44608.1.S1_at1/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46670Os.11719.1.S1_at11/117+27887725..27889622expressed protein
LOC_Os07g46670Os.11719.1.S2_at11/117+27887725..27889622expressed protein
LOC_Os07g46680OsAffx.28871.1.S1_at1/117+27898684..27899599hypothetical protein
LOC_Os07g46690Os.27554.1.S1_x_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46690OsAffx.5653.1.S1_at11/117+27901272..27910515PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1524.1.S1_at--1141--7771Chr07:27878582..27878606 (25 bp)
GGTCCCATCGGGTTGAGAATTTGTT
LOC_Os07g46650
OsAffx.1524.1.S1_at--132--8571Chr07:27878536..27878560 (25 bp)
TGGATCCATGCACGTGACTTCTTAT
LOC_Os07g46650
OsAffx.1524.1.S1_at--859--3211Chr07:27878485..27878509 (25 bp)
CAAGGTTGACCGTGAGCGAGTTGCA
LOC_Os07g46650
OsAffx.1524.1.S1_at--1076--2991Chr07:27878397..27878421 (25 bp)
AATGATACTCCTCCTATGTGCGAAT
LOC_Os07g46650
OsAffx.1524.1.S1_at--607--2951Chr07:27878375..27878399 (25 bp)
AATGCCTAAAGCCAAACCTCACTGG
LOC_Os07g46650
OsAffx.1524.1.S1_at--70--9691Chr07:27878357..27878381 (25 bp)
TCACTGGAATACCATGCGCTCATGC
LOC_Os07g46650
OsAffx.1524.1.S1_at--349--10151Chr07:27878290..27878314 (25 bp)
TATCCATCCATATTACTCTTCATCA
LOC_Os07g46650
OsAffx.1524.1.S1_at--113--10471Chr07:27878278..27878302 (25 bp)
TTACTCTTCATCAACACTGGCAAGC
LOC_Os07g46650
OsAffx.1524.1.S1_at--530--8511Chr07:27878261..27878285 (25 bp)
TGGCAAGCACTTGGGCAGGTCAATT
LOC_Os07g46650
OsAffx.1524.1.S1_at--170--8271Chr07:27878248..27878272 (25 bp)
GGCAGGTCAATTTCATCCCTATGGA
LOC_Os07g46650
OsAffx.1524.1.S1_at--104--6132Chr09:15022340..15022359 (20 bp)
GAGTGGCCACCATATATTGGTCCAG
NONE
Target Sequence 
GGTCCCATCGGGTTGAGAATTTGTTAGTAAAGCGAGGGAATAAGGCTGGATCCATGCACGTGACTTCTTATGGTGATGAA
GGTGGTGAGTATGAGGTCAAGGTTGACCGTGAGCGAGTTGCAGTAGTGCAAGGAAATCATACTGCATATGTTCGAAGAGA
TTTCAAGTATAAAGTAATAATACACAATGATACTCCTCCTATGTGCGAATGCCTAAAGCCAAACCTCACTGGAATACCAT
GCGCTCATGCCCTTGCTGTTTGCAAGGATAGAAATTTCAATGAGAATCAATTTATCCATCCATATTACTCTTCATCAACA
CTGGCAAGCACTTGGGCAGGTCAATTTCATCCCTATGGAAATCAAAATGAGTGGCCACCATATATTGGTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis