Browse Element(s) Details


Os.44611.1.S1_at

Description gb:AK119617.1
DB_XREF= gi:37989240
TID=Os.44611.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.44611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0496C02.23 (P0496C02.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-G09, full insert sequence.
FL= gb:AK119617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4662011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46590Os.14772.1.S1_s_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S1_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.2.S1_x_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S2_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.14772.1.S1_x_at2/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46600Os.27129.1.S1_at11/117+27839695..27843713RNA pseudouridylate synthase family protein, expressed
LOC_Os07g46610Os.44613.1.S1_at11/117+27844412..27846100Cis-zeatin O-glucosyltransferase 2, putative, expressed
LOC_Os07g46620Os.44611.1.S1_at11/117+27849103..27853387expressed protein
LOC_Os07g46630Os.34191.1.S1_at11/117+27863332..27866538adenosine/AMP deaminase family protein, putative, expressed
LOC_Os07g46640Os.17163.1.S1_at10/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46640OsAffx.20501.1.S1_at1/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46650OsAffx.1524.1.S1_at11/117+27877952..27880702transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44611.1.S1_at--304--5211Chr07:27852435..27852456 (22 bp)
GAATATCCAATTGAGGCCCTTGCTT
LOC_Os07g46620
Os.44611.1.S1_at--154--8411Chr07:27852449..27852557 (25 bp)
GGCCCTTGCTTTCTCAAATGACAGA
LOC_Os07g46620
Os.44611.1.S1_at--939--3131Chr07:27852558..27852582 (25 bp)
AATTATCTAGGCAGCATTTCACACG
LOC_Os07g46620
Os.44611.1.S1_at--575--2771Chr07:27852783..27852807 (25 bp)
AAGACCTCTTGAATCGCCAACAGTT
LOC_Os07g46620
Os.44611.1.S1_at--235--6491Chr07:27853056..27853080 (25 bp)
GATAGACCCACATCAGACTTCTTTG
LOC_Os07g46620
Os.44611.1.S1_at--612--5691Chr07:27853071..27853095 (25 bp)
GACTTCTTTGCAGATTTGTAGCCTA
LOC_Os07g46620
Os.44611.1.S1_at--1125--6951Chr07:27853088..27853112 (25 bp)
GTAGCCTAACCATTTCACAGGGCAA
LOC_Os07g46620
Os.44611.1.S1_at--810--10351Chr07:27853130..27853154 (25 bp)
TTTTGACGGCCGATGCAGTTTTGAT
LOC_Os07g46620
Os.44611.1.S1_at--888--2991Chr07:27853177..27853201 (25 bp)
AATGTTGTTTACTAGCGCATCGGCT
LOC_Os07g46620
Os.44611.1.S1_at--1078--2851Chr07:27853337..27853361 (25 bp)
AAGTGCCCTGATATTGTCGAATGCG
LOC_Os07g46620
Os.44611.1.S1_at--978--5371Chr07:27853363..27853387 (25 bp)
GAAGCATGGATCTTCTTTCCCTTTT
LOC_Os07g46620
Target Sequence 
GAATATCCAATTGAGGCCCTTGCTTTCTCAAATGACAGAAATTATCTAGGCAGCATTTCACACGATAAAATGTTGANGCT
CTGGGACTTGCAAGACCTCTTGAATCGCCAACAGTTAGTTCAGGATGATAAACTTGGTGAACAAGATAGTGATGACAGTG
ATGATGACGGTATGGATGTAGACATGGATCCGAACTCNTTCGAAAGGATCAAGGAGTACAAAGACAAGCAAGGGTCAGAG
TTCAGATAGACCCACATCAGACTTCTTTGCAGATTTGTAGCCTAACCATTTCACAGGGCAAGGTTGTCCACAAGCAATTT
TTGACGGCCGATGCAGTTTTGATATTTTCCGTTGCAATGCATATCAATGTTGTTTACTAGCGCATCGGCTTGTATTAGGG
TGTGATTTTCATGATCTCTCACCAATAGGGAGAGAGGATATGTTCAGTTATCAATATTCAATATTGAGGGGAAAAAATGT
TCTAGGATGTGCTCTATTGAGGTATACTAGTATTGTAAAGTGCTAAAGTGCCCTGATATTGTCGAATGCGTGAAGCATGG
ATCTTCTTTCCCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis