Browse Element(s) Details


Os.14772.1.S1_s_at

Description gb:BI807148
DB_XREF= gi:15854352
DB_XREF=S084F08
CLONE=S084F08
TID=Os.14772.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14772 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4659011/11Chromodomain-helicase-DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46550OsAffx.16735.1.S1_at11/117+27798862..27800717Annexin family protein
LOC_Os07g46560Os.31545.1.S1_at11/117+27806098..27809817Ubiquitin ligase SINAT5, putative, expressed
LOC_Os07g46570Os.37097.1.S1_at11/117+27812440..27813522Glutaredoxin family protein, expressed
LOC_Os07g46580OsAffx.22532.2.S1_x_at11/117+27818221..27822069ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os07g46590Os.14772.1.S1_s_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S1_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.2.S1_x_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S2_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.14772.1.S1_x_at2/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46600Os.27129.1.S1_at11/117+27839695..27843713RNA pseudouridylate synthase family protein, expressed
LOC_Os07g46610Os.44613.1.S1_at11/117+27844412..27846100Cis-zeatin O-glucosyltransferase 2, putative, expressed
LOC_Os07g46620Os.44611.1.S1_at11/117+27849103..27853387expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0008283biological_processcell proliferation
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0016481biological_processnegative regulation of transcription
GO:0016568biological_processchromatin modification
GO:0048364biological_processroot development
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14772.1.S1_s_at--1080--351Chr07:27824549..27824573 (25 bp)
ATAATGAAGTGCTGGAACCTGATGT
LOC_Os07g46590
Os.14772.1.S1_s_at--1122--2851Chr07:27824543..27824567 (25 bp)
AAGTGCTGGAACCTGATGTGGACCA
LOC_Os07g46590
Os.14772.1.S1_s_at--366--7311Chr07:27824541..27824565 (25 bp)
GTGCTGGAACCTGATGTGGACCACA
LOC_Os07g46590
Os.14772.1.S1_s_at--259--5251Chr07:27824511..27824535 (25 bp)
GAATCCGAGTCTAAAAGAAATGCCA
LOC_Os07g46590
Os.14772.1.S1_s_at--33--991Chr07:27824476..27824500 (25 bp)
AGGAGATGCTGGCACCTTTAGCAGA
LOC_Os07g46590
Os.14772.1.S1_s_at--804--6031Chr07:27824474..27824498 (25 bp)
GAGATGCTGGCACCTTTAGCAGATG
LOC_Os07g46590
Os.14772.1.S1_s_at--1034--6331Chr07:27824472..27824496 (25 bp)
GATGCTGGCACCTTTAGCAGATGTA
LOC_Os07g46590
Os.14772.1.S1_s_at--836--4711Chr07:27824469..27824493 (25 bp)
GCTGGCACCTTTAGCAGATGTACAC
LOC_Os07g46590
Os.14772.1.S1_s_at--253--8511Chr07:27824467..27824491 (25 bp)
TGGCACCTTTAGCAGATGTACACAC
LOC_Os07g46590
Os.14772.1.S1_s_at--406--5091Chr07:27824465..27824489 (25 bp)
GCACCTTTAGCAGATGTACACACAC
LOC_Os07g46590
Os.14772.1.S1_s_at--470--4311Chr07:27824462..27824486 (25 bp)
CCTTTAGCAGATGTACACACACAAG
LOC_Os07g46590
Target Sequence 
ATAATGAAGTGCTGGAACCTGATGTGGACCACANGNTTTGAATCCGAGTCTAAAAGAAATGCCACGGGGTTCTGAGGAGA
TGCTGGCACCTTTAGCAGATGTACACACACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14772.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis