Browse Element(s) Details


Os.11138.2.S1_x_at

Description gb:NM_186008.1
DB_XREF= gi:34899101
GEN=P0496C02.17
TID=Os.11138.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11138 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative chromodomain-helicase-DNA-binding protein (P0496C02.17), mRNA.
PROD=putative chromodomain-helicase-DNA-bindingprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4659011/11Chromodomain-helicase-DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46550OsAffx.16735.1.S1_at11/117+27798862..27800717Annexin family protein
LOC_Os07g46560Os.31545.1.S1_at11/117+27806098..27809817Ubiquitin ligase SINAT5, putative, expressed
LOC_Os07g46570Os.37097.1.S1_at11/117+27812440..27813522Glutaredoxin family protein, expressed
LOC_Os07g46580OsAffx.22532.2.S1_x_at11/117+27818221..27822069ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os07g46590Os.14772.1.S1_s_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S1_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.2.S1_x_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S2_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.14772.1.S1_x_at2/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46600Os.27129.1.S1_at11/117+27839695..27843713RNA pseudouridylate synthase family protein, expressed
LOC_Os07g46610Os.44613.1.S1_at11/117+27844412..27846100Cis-zeatin O-glucosyltransferase 2, putative, expressed
LOC_Os07g46620Os.44611.1.S1_at11/117+27849103..27853387expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0008283biological_processcell proliferation
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0016481biological_processnegative regulation of transcription
GO:0016568biological_processchromatin modification
GO:0048364biological_processroot development
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11138.2.S1_x_at--1036--5951Chr07:27825110..27825134 (25 bp)
GAGCAATTGCACGACCTCTATTTAA
LOC_Os07g46590
Os.11138.2.S1_x_at--1059--8171Chr07:27825066..27825090 (25 bp)
GGAAGCTGGAGTAGGTCCGTCACAT
LOC_Os07g46590
Os.11138.2.S1_x_at--1107--7471Chr07:27825040..27825064 (25 bp)
GTGGGAATTTTGCATCAGTCCCTCC
LOC_Os07g46590
Os.11138.2.S1_x_at--78--7571Chr07:27825008..27825032 (25 bp)
GGGCCTAAATCAAATCAGCTCCATC
LOC_Os07g46590
Os.11138.2.S1_x_at--499--2451Chr07:27824964..27824988 (25 bp)
AACAAGGTCTGTCCAGTACGTCTCT
LOC_Os07g46590
Os.11138.2.S1_x_at--840--6991Chr07:27824949..27824973 (25 bp)
GTACGTCTCTGAGTCTTTCAACAAT
LOC_Os07g46590
Os.11138.2.S1_x_at--1068--3131Chr07:27824909..27824933 (25 bp)
AATTCTGAAGCCTGGAAGCGACGGA
LOC_Os07g46590
Os.11138.2.S1_x_at--770--9791Chr07:27824856..27824880 (25 bp)
TAACCAACCTTTGTATCAGGCTCCT
LOC_Os07g46590
Os.11138.2.S1_x_at--182--3491Chr07:27824840..27824864 (25 bp)
CAGGCTCCTCCAATCATGACAAATG
LOC_Os07g46590
Os.11138.2.S1_x_at--356--9531Chr07:27824778..27824802 (25 bp)
TCTTGGTTGGGCTCCGGTTGAAATG
LOC_Os07g46590
Os.11138.2.S1_x_at--811--2411Chr07:27824730..27824754 (25 bp)
AAAAAGAGGTGTTCATCCCAGTCGT
LOC_Os07g46590
Target Sequence 
GAGCAATTGCACGACCTCTATTTAAAACTTAGTCAGGACCAAATGGAAGCTGGAGTAGGTCCGTCACATGGTGGGAATTT
TGCATCAGTCCCTCCCAACAGGGGGCCTAAATCAAATCAGCTCCATCCTTCCAGAAACCAAAGGTCAACAAGGTCTGTCC
AGTACGTCTCTGAGTCTTTCAACAATGGTGAAAACACTGGGAATTCTGAAGCCTGGAAGCGACGGAGAAGATCTGAGCCT
GATAATCAATTTGATAACCAACCTTTGTATCAGGCTCCTCCAATCATGACAAATGGAAACAGGTTACAGGAATCTAGCAG
TTCTGCTGGTATTCTTGGTTGGGCTCCGGTTGAAATGAGACGATACGGCAATGAAAGACCAAAAAGAGGTGTTCATCCCA
GTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11138.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis