Browse Element(s) Details


Os.27129.1.S1_at

Description gb:AK065105.1
DB_XREF= gi:32975123
TID=Os.27129.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0496C02.20 (P0496C02.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001N13, full insert sequence.
FL= gb:AK065105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4660011/11RNA pseudouridylate synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46580OsAffx.22532.2.S1_x_at11/117+27818221..27822069ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os07g46590Os.14772.1.S1_s_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S1_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.2.S1_x_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S2_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.14772.1.S1_x_at2/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46600Os.27129.1.S1_at11/117+27839695..27843713RNA pseudouridylate synthase family protein, expressed
LOC_Os07g46610Os.44613.1.S1_at11/117+27844412..27846100Cis-zeatin O-glucosyltransferase 2, putative, expressed
LOC_Os07g46620Os.44611.1.S1_at11/117+27849103..27853387expressed protein
LOC_Os07g46630Os.34191.1.S1_at11/117+27863332..27866538adenosine/AMP deaminase family protein, putative, expressed
LOC_Os07g46640Os.17163.1.S1_at10/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46640OsAffx.20501.1.S1_at1/117+27867221..27874787Glycosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004730molecular_functionpseudouridylate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27129.1.S1_at--1063--7751Chr07:27840246..27840270 (25 bp)
GGTGAACACCATTCTTATAAGGCAG
LOC_Os07g46600
Os.27129.1.S1_at--682--1411Chr07:27840155..27840179 (25 bp)
AGAATTTTAGCCCTGAACCTCAGCC
LOC_Os07g46600
Os.27129.1.S1_at--1113--8311Chr07:27840124..27840148 (25 bp)
GGCTCATTTTGTGTGTTCTGGCAGA
LOC_Os07g46600
Os.27129.1.S1_at--1026--6711Chr07:27840110..27840134 (25 bp)
GTTCTGGCAGAGGTCGGATCTCCAA
LOC_Os07g46600
Os.27129.1.S1_at--403--6411Chr07:27840094..27840118 (25 bp)
GATCTCCAAGGTTATTTGGCCGCCA
LOC_Os07g46600
Os.27129.1.S1_at--608--3991Chr07:27840024..27840048 (25 bp)
CGTGGTGCCACCGATGAAAAGCTTA
LOC_Os07g46600
Os.27129.1.S1_at--91--9331Chr07:27839985..27840009 (25 bp)
TCCCACATCCTTCCAAAATATCTTG
LOC_Os07g46600
Os.27129.1.S1_at--703--6051Chr07:27839916..27839940 (25 bp)
GAGTTGTACACTTCTAGCTGTTATA
LOC_Os07g46600
Os.27129.1.S1_at--233--6091Chr07:27839882..27839906 (25 bp)
GAGTAGCTCATTTGCATTGCCACAC
LOC_Os07g46600
Os.27129.1.S1_at--1002--10791Chr07:27839828..27839852 (25 bp)
TTGTCAGAGTTTTGCCCAAGGTGCT
LOC_Os07g46600
Os.27129.1.S1_at--815--7851Chr07:27839761..27839785 (25 bp)
GGTATTTTGTACTGTCCCGAGATTT
LOC_Os07g46600
Target Sequence 
GGTGAACACCATTCTTATAAGGCAGGAGTTCCATGGTGGCGGCAAGATGCAGTTGAATCTGACTTGATCTGAAGAAGAAC
AGGAGTATATGAGAATTTTAGCCCTGAACCTCAGCCTGGGGTGGCTCATTTTGTGTGTTCTGGCAGAGGTCGGATCTCCA
AGGTTATTTGGCCGCCAAAGAGAAACATAAAAAAAAATGCCAAATATGAAAACCACAGAATGCGTGGTGCCACCGATGAA
AAGCTTACACGCCAAAAATCTTCCCACATCCTTCCAAAATATCTTGCTACAGATTATTCTACATCTCAGATGAAACTTAC
TGACAGAGTTGAGTTGTACACTTCTAGCTGTTATATCTGGGGTGGAGTAGCTCATTTGCATTGCCACACATGCAACATTT
TACTTCTAGAGTGTAATTTTGTCAGAGTTTTGCCCAAGGTGCTGTACATCTTCGAAATTTACATCTTTTGTCAGTAACTT
GTTCTGGTATTTTGTACTGTCCCGAGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis