Browse Element(s) Details


Os.11719.1.S2_at

Description gb:AK107202.1
DB_XREF= gi:32992411
TID=Os.11719.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11719 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C96778(C10671),D22278(C10671)~unknown protein (P0453E03.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-B04, full insert sequence.
FL= gb:AK102682.1 gb:AK068814.1 gb:AK105973.1 gb:AK107202.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4667011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46630Os.34191.1.S1_at11/117+27863332..27866538adenosine/AMP deaminase family protein, putative, expressed
LOC_Os07g46640Os.17163.1.S1_at10/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46640OsAffx.20501.1.S1_at1/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46650OsAffx.1524.1.S1_at11/117+27877952..27880702transposon protein, putative, Mutator sub-class
LOC_Os07g46660Os.10037.1.S1_at11/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.6243.1.S1_at2/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.44608.1.S1_at1/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46670Os.11719.1.S1_at11/117+27887725..27889622expressed protein
LOC_Os07g46670Os.11719.1.S2_at11/117+27887725..27889622expressed protein
LOC_Os07g46680OsAffx.28871.1.S1_at1/117+27898684..27899599hypothetical protein
LOC_Os07g46690Os.27554.1.S1_x_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46690OsAffx.5653.1.S1_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46700Os.25027.1.S1_a_at11/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_x_at10/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_at8/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.11734.1.S1_a_at1/117+27913627..27919498RNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009617biological_processresponse to bacteria
GO:0009644biological_processresponse to high light intensity
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11719.1.S2_at--938--1471Chr07:27888237..27888261 (25 bp)
AGCAATATCTACGTGTGAGGTGTCA
LOC_Os07g46670
Os.11719.1.S2_at--496--1251Chr07:27888178..27888202 (25 bp)
AGATTGATTTCTGCAGCTGGCTGTT
LOC_Os07g46670
Os.11719.1.S2_at--658--7911Chr07:27888151..27888175 (25 bp)
GGTTGCAGAGATATCCATAGACATT
LOC_Os07g46670
Os.11719.1.S2_at--3--6531Chr07:27888110..27888134 (25 bp)
GATTTATTCTTGACGTTGGCTTTCA
LOC_Os07g46670
Os.11719.1.S2_at--923--8291Chr07:27888093..27888117 (25 bp)
GGCTTTCAATTTCTGGTTGGCTCTC
LOC_Os07g46670
Os.11719.1.S2_at--686--6611Chr07:27888078..27888102 (25 bp)
GTTGGCTCTCTCAACTTTGAACTGA
LOC_Os07g46670
Os.11719.1.S2_at--983--10611Chr07:27888049..27888073 (25 bp)
TTCGTATGATGAACATGCCAGCTTT
LOC_Os07g46670
Os.11719.1.S2_at--1--1591Chr07:27888008..27888032 (25 bp)
AGCTCAGCCATGTCAAACTGTCATT
LOC_Os07g46670
Os.11719.1.S2_at--476--2991Chr07:27887897..27887921 (25 bp)
AATGTCTTGGTTTAGGTTCAGTTAG
LOC_Os07g46670
Os.11719.1.S2_at--748--5291Chr07:27887859..27887883 (25 bp)
GAAGGCCATGTTGATTCAGCAGTCA
LOC_Os07g46670
Os.11719.1.S2_at--369--6571Chr07:27887847..27887871 (25 bp)
GATTCAGCAGTCAAGTCTCTAAAAC
LOC_Os07g46670
Target Sequence 
AGCAATATCTACGTGTGAGGTGTCACAGATAAATGCTAGACGGAAACAGCATTAAGTTCAGATTGATTTCTGCAGCTGGC
TGTTAAGGTTGCAGAGATATCCATAGACATTCTAACAATAGGTAGCTGATTTATTCTTGACGTTGGCTTTCAATTTCTGG
TTGGCTCTCTCAACTTTGAACTGAAGAGTTCGTATGATGAACATGCCAGCTTTGCATAAACAGGCATACAGCTCAGCCAT
GTCAAACTGTCATTAAATTATTTGAGAACTTAGTATGCAATGCAAGATAAGACATGGTTTCTAAACTATAAGCATGAAAG
CAAAATGTATCGTGCAAGAGAATGTCTTGGTTTAGGTTCAGTTAGGTAGCAAATTATGGAAGGCCATGTTGATTCAGCAG
TCAAGTCTCTAAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11719.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis