Browse Element(s) Details


OsAffx.24221.1.S1_at

Description tigr:9630.m01198
TID=OsAffx.24221.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1307011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13000Os.23706.1.A1_x_at1/112+6891525..6893620retrotransposon protein, putative, unclassified
LOC_Os02g13010NANA2+6894242..6897521retrotransposon protein, putative, unclassified
LOC_Os02g13020Os.52655.1.S1_x_at11/112+6902424..6903970expressed protein
LOC_Os02g13020Os.52655.1.S1_at11/112+6902424..6903970expressed protein
LOC_Os02g13020OsAffx.19426.1.S1_x_at1/112+6902424..6903970expressed protein
LOC_Os02g13030OsAffx.12013.1.S1_at11/112+6905218..6905667hypothetical protein
LOC_Os02g13040OsAffx.2589.1.S1_at11/112+6906296..6907364hypothetical protein
LOC_Os02g13050NANA2+6909190..6909835hypothetical protein
LOC_Os02g13060Os.27857.1.S1_at11/112+6915424..6916662expressed protein
LOC_Os02g13070OsAffx.24221.1.S1_at11/112+6917971..6918449hypothetical protein
LOC_Os02g13080OsAffx.12014.1.S1_at11/112+6920986..6921457hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24221.1.S1_at--405--6791Chr02:6918113..6918137 (25 bp)
GTTATGATCTTCAACGAGCTACCAT
LOC_Os02g13070
OsAffx.24221.1.S1_at--262--6431Chr02:6918108..6918132 (25 bp)
GATCTTCAACGAGCTACCATGACCT
LOC_Os02g13070
OsAffx.24221.1.S1_at--655--1571Chr02:6918097..6918121 (25 bp)
AGCTACCATGACCTACATATATGGT
LOC_Os02g13070
OsAffx.24221.1.S1_at--239--3731Chr02:6918085..6918109 (25 bp)
CTACATATATGGTCGGTCACAGCAG
LOC_Os02g13070
OsAffx.24221.1.S1_at--688--271Chr02:6918079..6918103 (25 bp)
ATATGGTCGGTCACAGCAGATGGAG
LOC_Os02g13070
OsAffx.24221.1.S1_at--999--1311Chr02:6918062..6918086 (25 bp)
AGATGGAGACTCAGCTCACGTCCGA
LOC_Os02g13070
OsAffx.24221.1.S1_at--1050--1391Chr02:6918056..6918080 (25 bp)
AGACTCAGCTCACGTCCGAGGCAAA
LOC_Os02g13070
OsAffx.24221.1.S1_at--702--4831Chr02:6918049..6918073 (25 bp)
GCTCACGTCCGAGGCAAACGTCATA
LOC_Os02g13070
OsAffx.24221.1.S1_at--782--6111Chr02:6918039..6918063 (25 bp)
GAGGCAAACGTCATACCAAACTTTT
LOC_Os02g13070
OsAffx.24221.1.S1_at--377--4011Chr02:6918031..6918055 (25 bp)
CGTCATACCAAACTTTTCCCATGTA
LOC_Os02g13070
OsAffx.24221.1.S1_at--961--10631Chr02:6918016..6918040 (25 bp)
TTCCCATGTAGAAACAATCTTGTTA
LOC_Os02g13070
Target Sequence 
GTTATGATCTTCAACGAGCTACCATGACCTACATATATGGTCGGTCACAGCAGATGGAGACTCAGCTCACGTCCGAGGCA
AACGTCATACCAAACTTTTCCCATGTAGAAACAATCTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis