Browse Element(s) Details


Os.20597.1.S1_at

Description gb:AK066377.1
DB_XREF= gi:32976395
TID=Os.20597.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065M02, full insert sequence.
FL= gb:AK066377.1 gb:AK099326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0387011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03830Os.28346.3.S1_x_at11/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03830OsAffx.17950.1.S1_at7/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03830Os.28346.1.S1_x_at4/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03830Os.28346.5.S1_x_at1/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03840Os.38390.1.S1_at3/111+1621961..1623376expressed protein
LOC_Os01g03850OsAffx.10584.1.S1_at7/111+1628808..1629835hypothetical protein
LOC_Os01g03850Os.52655.1.S1_at1/111+1628808..1629835hypothetical protein
LOC_Os01g03860NANA1+1634909..1635838hypothetical protein
LOC_Os01g03870Os.20597.1.S1_at11/111+1638036..1640953expressed protein
LOC_Os01g03880Os.47130.4.A1_x_at3/111+1643960..1644217retrotransposon protein, putative, unclassified
LOC_Os01g03890OsAffx.22801.1.S1_at11/111+1654178..1655190seed specific protein Bn15D17A, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20597.1.S1_at--1155--311Chr01:1638529..1638553 (25 bp)
ATACTGCTGGGCTTAATCGACCTCA
LOC_Os01g03870
Os.20597.1.S1_at--233--531Chr01:1638514..1638538 (25 bp)
ATCGACCTCAAGATCGTGGCCAGAG
LOC_Os01g03870
Os.20597.1.S1_at--307--5271Chr01:1638483..1638507 (25 bp)
GAATGCCGGAGATCACCGATCAGCA
LOC_Os01g03870
Os.20597.1.S1_at--402--4051Chr01:1638467..1638491 (25 bp)
CGATCAGCAGCTGCACTGGTGCGAG
LOC_Os01g03870
Os.20597.1.S1_at--55--2811Chr01:1638423..1638447 (25 bp)
AAGTCGACCCGGCTCAGGGCAAGAT
LOC_Os01g03870
Os.20597.1.S1_at--856--10371Chr01:1638378..1638402 (25 bp)
TTTTCTTCCCTGCACATTGACAGCA
LOC_Os01g03870
Os.20597.1.S1_at--672--7051Chr01:1638341..1638365 (25 bp)
GTAACTAGCTAGTCCCTGCTTGTAA
LOC_Os01g03870
Os.20597.1.S1_at--172--3071Chr01:1638318..1638342 (25 bp)
AATCTACTACTTTTTTCTTGCCCAT
LOC_Os01g03870
Os.20597.1.S1_at--484--3091Chr01:1638228..1638252 (25 bp)
AATATGCATGGCACGCAGCTAGCCT
LOC_Os01g03870
Os.20597.1.S1_at--1040--3391Chr01:1638213..1638237 (25 bp)
CAGCTAGCCTGATCTAGTTCTGTAA
LOC_Os01g03870
Os.20597.1.S1_at--775--5991Chr01:1638107..1638131 (25 bp)
GAGACCCACATCAATCTTGTAGTTG
LOC_Os01g03870
Target Sequence 
ATACTGCTGGGCTTAATCGACCTCAAGATCGTGGCCAGAGTGCTGCGAATGCCGGAGATCACCGATCAGCAGCTGCACTG
GTGCGAGGAGAAGATGAACAGGGTCAAAGTCGACCCGGCTCAGGGCAAGATGCAGAGGGACCCGTCTCCTCTTTTCTTCC
CTGCACATTGACAGCAGCATCAGCAGCTGTAACTAGCTAGTCCCTGCTTGTAATCTACTACTTTTTTCTTGCCCATCTCC
TCTTCAAATCTTCCTTTGTTGATNTAGTGAGAAAAANGATAAAGTTGCATAGACGACATGAGAATATGCATGGCACGCAG
CTAGCCTGATCTAGTTCTGTAAAAAGAGAGTCAGAGATNNCGATGAAGAGATCGTGTAAAGGCAATATATGTGTACTTAT
GTATTTATACATAGTAGATAAATAAGAGACCCACATCAATCTTGTAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis