Browse Element(s) Details


Os.38390.1.S1_at

Description gb:BP184350
DB_XREF= gi:32947778
DB_XREF=BP184350
TID=Os.38390.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g038403/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03820NANA1+1596496..1601412C2 domain containing protein, expressed
LOC_Os01g03830Os.28346.3.S1_x_at11/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03830OsAffx.17950.1.S1_at7/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03830Os.28346.1.S1_x_at4/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03830Os.28346.5.S1_x_at1/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03840Os.38390.1.S1_at3/111+1621961..1623376expressed protein
LOC_Os01g03850OsAffx.10584.1.S1_at7/111+1628808..1629835hypothetical protein
LOC_Os01g03850Os.52655.1.S1_at1/111+1628808..1629835hypothetical protein
LOC_Os01g03860NANA1+1634909..1635838hypothetical protein
LOC_Os01g03870Os.20597.1.S1_at11/111+1638036..1640953expressed protein
LOC_Os01g03880Os.47130.4.A1_x_at3/111+1643960..1644217retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0009965biological_processleaf morphogenesis
GO:0010093biological_processspecification of floral organ identity
GO:0010158biological_processabaxial cell fate specification
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38390.1.S1_at--594--3911Chr01:1623291..1623315 (25 bp)
CGGCGAACGTGCAGCCCGACAACGG
LOC_Os01g03840
Os.38390.1.S1_at--1077--5611Chr01:1623308..1623332 (25 bp)
GACAACGGCAACTGCAACTGCAGCT
LOC_Os01g03840
Os.38390.1.S1_at--975--1971Chr01:1623318..1623342 (25 bp)
ACTGCAACTGCAGCTTCGGGTGCGG
LOC_Os01g03840
Os.38390.1.S1_at--511--4471Chr01:1623368..1623392 (25 bp)
GCCTCCTGAGCTGACGCGTAGTATT
NONE
Os.38390.1.S1_at--1034--8891Chr01:1623374..1623398 (25 bp)
TGAGCTGACGCGTAGTATTTACTGC
NONE
Os.38390.1.S1_at--123--6892Chr07:24651694..24651714 (21 bp)
GTATTTACTGCGTTTGATGTGATTG
NONE
Os.38390.1.S1_at--457--5031Chr01:1623412..1623436 (25 bp)
GCAGTTAAGTTATTGTTCATGTAAA
NONE
Os.38390.1.S1_at--271--3511Chr01:1623429..1623453 (25 bp)
CATGTAAATTACTAAGAGCCAAGAA
NONE
Os.38390.1.S1_at--32--5331Chr01:1623458..1623482 (25 bp)
GAAGTGTTCGTGATCGATAGGCGAT
NONE
Os.38390.1.S1_at--1087--9371Chr01:1623471..1623495 (25 bp)
TCGATAGGCGATGTGTTAATTTGGG
NONE
Os.38390.1.S1_at--13--531Chr01:1623507..1623531 (25 bp)
ATCGAGATCGATGGGTAGTTGTTCA
NONE
Target Sequence 
CGGCGAACGTGCAGCCCGACAACGGCAACTGCAACTGCAGCTTCGGGTGCGGCCNCAGCAACAGGAACGTGAACGCCGCC
TCCTGAGCTGACGCGTAGTATTTACTGCGTTTGATGTGATTGCAGTTAAGTTATTGTTCATGTAAATTACTAAGAGCCAA
GAAATTAGAAGTGTTCGTGATCGATAGGCGATGTGTTAATTTGGGGGGCAAGAGAGATCGAGATCGATGGGTAGTTGTTC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis