Browse Element(s) Details


Os.30615.1.S1_at

Description gb:AK108589.1
DB_XREF= gi:32993798
TID=Os.30615.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ9990_A01.18 (OJ9990_A01.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-C07, full insert sequence.
FL= gb:AK108589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0671011/11F-box domain containing protein, expressed
LOC_Os08g067801/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06640OsAffx.9796.1.S1_x_at11/118+3733845..3739068expressed protein
LOC_Os08g06640Os.17547.1.S1_at9/118+3733845..3739068expressed protein
LOC_Os08g06659Os.31625.1.S1_at11/118+3741880..3743529expressed protein
LOC_Os08g06659OsAffx.29067.1.S1_s_at11/118+3741880..3743529expressed protein
LOC_Os08g06659Os.31625.2.S1_x_at11/118+3741880..3743529expressed protein
LOC_Os08g06680OsAffx.5725.1.S1_at11/118+3744313..3744615hypothetical protein
LOC_Os08g06690OsAffx.21982.1.S1_x_at11/118+3746663..3748451hypothetical protein
LOC_Os08g06690OsAffx.1199.1.S1_at1/118+3746663..3748451hypothetical protein
LOC_Os08g06700Os.31736.1.S1_at11/118+3750972..3754484expressed protein
LOC_Os08g06700OsAffx.21982.1.S1_x_at5/118+3750972..3754484expressed protein
LOC_Os08g06710Os.30615.1.S1_at11/118+3756930..3758452F-box domain containing protein, expressed
LOC_Os08g06720Os.31718.2.S1_at3/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.31718.2.S1_x_at2/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.8726.3.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06720OsAffx.1199.1.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06730Os.31718.1.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_x_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06740OsAffx.16859.1.S1_at11/118+3767486..3769379hypothetical protein
LOC_Os08g06740OsAffx.21982.1.S1_x_at1/118+3767486..3769379hypothetical protein
LOC_Os08g06750OsAffx.17666.1.S1_at1/118+3770421..3770833hypothetical protein
LOC_Os08g06760OsAffx.16860.1.S1_at11/118+3772472..3773755hypothetical protein
LOC_Os08g06770OsAffx.16861.1.S1_at11/118+3774769..3777142hypothetical protein
LOC_Os08g06770OsAffx.10584.1.S1_at1/118+3774769..3777142hypothetical protein
LOC_Os08g06780Os.30615.1.S1_at1/118+3779519..3780768F-box domain containing protein
LOC_Os08g06790OsAffx.16862.1.S1_at10/118+3782594..3784548hypothetical protein
LOC_Os08g06790OsAffx.5853.1.S1_at1/118+3782594..3784548hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30615.1.S1_at--936--8991Chr08:3757440..3757464 (25 bp)
TGAAGATTTACCACTCGGCACCAAG
LOC_Os08g06710
Os.30615.1.S1_at--226--1511Chr08:3757417..3757441 (25 bp)
AGCACCTGCAGATCTTCAAGGTCGA
LOC_Os08g06710
Os.30615.1.S1_at--101--6311Chr08:3757256..3757280 (25 bp)
GATGACCACGAACTCGTCAGCGTGA
LOC_Os08g06710
Os.30615.1.S1_at--719--7091Chr08:3757241..3757265 (25 bp)
GTCAGCGTGAGTAAGCATTGCCGGC
LOC_Os08g06710
Os.30615.1.S1_at--240--7112Chr08:3780689..3780713 (25 bp)
GTCAGATGGAAAGGCTCTCCGGCGA
LOC_Os08g06780
Os.30615.1.S1_at--1142--9451Chr08:3757111..3757135 (25 bp)
TCTGGATCACGCCAACATTCTACTA
LOC_Os08g06710
Os.30615.1.S1_at--225--9992Chr08:3757088..3757112 (25 bp)
TAGCGCATCTCGTGCCTTTAGTTAG
LOC_Os08g06710
Os.30615.1.S1_at--469--3671Chr08:3757073..3757097 (25 bp)
CTTTAGTTAGCACCCACACATTTTA
LOC_Os08g06710
Os.30615.1.S1_at--1158--2691Chr08:3757013..3757037 (25 bp)
AAGCATCAAGTAGTTTCTCGTGGAA
LOC_Os08g06710
Os.30615.1.S1_at--278--271Chr08:3756989..3757013 (25 bp)
ATGATGGCCAATTCGGTCTTTTGAG
LOC_Os08g06710
Os.30615.1.S1_at--811--6071Chr08:3756967..3756991 (25 bp)
GAGTTTTCTAGTATCTGTGCACATG
LOC_Os08g06710
Target Sequence 
TGAAGATTTACCACTCGGCACCAAGCACCTGCAGATCTTCAAGGTCGACGGCGGCGAGCAGAAGCTCGTGGAGGCGTCGG
CGGCGAGCTTGGAGGATCATGTCCTCTTCCTCGGTCACGGGTTCTCGGCGTGCTTCCCGGCCGAGCACTTCCCGGCGTTG
AAGCCCGGCTGCGCCTACCTCGCCGATGACCACGAACTCGTCAGCGTGAGTAAGCATTGCCGGCGAGACATTGGCAGATG
GGACATGAAGAGAGGTCAGATGGAAAGGCTCTCCGGCGAAGATGACGTGGCGGCGCCGTCTCAGCCTTGGCTCAACTGGC
CATCTCCTGTCTGGATCACGCCAACATTCTACTAGCGCATCTCGTGCCTTTAGTTAGCACCCACACATTTTATTTATTTT
GTCAATACGAATTATTGTTCTCTTGTGAAGCATCAAGTAGTTTCTCGTGGAATGATGGCCAATTCGGTCTTTTGAGTTTT
CTAGTATCTGTGCACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis