Browse Element(s) Details


Os.17547.1.S1_at

Description gb:AK060560.1
DB_XREF= gi:32970578
TID=Os.17547.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17547 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ9990_A01.12 (OJ9990_A01.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-F11, full insert sequence.
FL= gb:AK060560.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g066409/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06580Os.28943.1.S1_x_at1/118+3708558..3711635retrotransposon protein, putative, unclassified
LOC_Os08g06590OsAffx.5724.1.S1_x_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.2.S1_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.1.S1_at8/118+3713914..3714991hypothetical protein
LOC_Os08g06600Os.36139.1.S1_at11/118+3716022..3719897Nuf2 family protein, expressed
LOC_Os08g06610Os.12047.1.S1_a_at11/118+3720558..3721117Mps one binder kinase activator-like 1A, putative
LOC_Os08g06620OsAffx.16857.1.S1_s_at11/118+3721757..3722500expressed protein
LOC_Os08g06630Os.3407.1.S1_a_at10/118+3726171..3730177Sigma-70 region 2 family protein, expressed
LOC_Os08g06640OsAffx.9796.1.S1_x_at11/118+3733845..3739068expressed protein
LOC_Os08g06640Os.17547.1.S1_at9/118+3733845..3739068expressed protein
LOC_Os08g06659Os.31625.1.S1_at11/118+3741880..3743529expressed protein
LOC_Os08g06659OsAffx.29067.1.S1_s_at11/118+3741880..3743529expressed protein
LOC_Os08g06659Os.31625.2.S1_x_at11/118+3741880..3743529expressed protein
LOC_Os08g06680OsAffx.5725.1.S1_at11/118+3744313..3744615hypothetical protein
LOC_Os08g06690OsAffx.21982.1.S1_x_at11/118+3746663..3748451hypothetical protein
LOC_Os08g06690OsAffx.1199.1.S1_at1/118+3746663..3748451hypothetical protein
LOC_Os08g06700Os.31736.1.S1_at11/118+3750972..3754484expressed protein
LOC_Os08g06700OsAffx.21982.1.S1_x_at5/118+3750972..3754484expressed protein
LOC_Os08g06710Os.30615.1.S1_at11/118+3756930..3758452F-box domain containing protein, expressed
LOC_Os08g06720Os.31718.2.S1_at3/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.31718.2.S1_x_at2/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.8726.3.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06720OsAffx.1199.1.S1_at1/118+3761103..3762924hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17547.1.S1_at--34--2751Chr08:3738771..3738795 (25 bp)
AAGAAGACGGCCTCTGCCTCATCGT
LOC_Os08g06640
Os.17547.1.S1_at--910--9371Chr08:3738808..3738832 (25 bp)
TCGAGCTCGACACGTAGCCGATGCA
LOC_Os08g06640
Os.17547.1.S1_at--451--9991Chr08:3738822..3738846 (25 bp)
TAGCCGATGCATCCATGTCCTACTA
LOC_Os08g06640
Os.17547.1.S1_at--530--771Chr08:3738836..3738860 (25 bp)
ATGTCCTACTAGTCTTCGTCGTCGT
LOC_Os08g06640
Os.17547.1.S1_at--1021--2151Chr08:3738873..3738897 (25 bp)
ACAGCTGGCGAAGCACCGATGGATC
LOC_Os08g06640
Os.17547.1.S1_at--806--3491Chr08:3738905..3738929 (25 bp)
CATGGCGGCCATCAAAATCCTTCTG
LOC_Os08g06640
Os.17547.1.S1_at--572--2271Chr08:3738919..3738943 (25 bp)
AAATCCTTCTGTAAATTCACTTTGA
LOC_Os08g06640
Os.17547.1.S1_at--1096--9271Chr08:3738964..3738988 (25 bp)
TCCGTTCGTTCAAACTTTGTTGTAT
LOC_Os08g06640
Os.17547.1.S1_at--48--9831Chr08:3739007..3739031 (25 bp)
TAAAATCCAACCCTGAATCTGCGCC
LOC_Os08g06640
Os.17547.1.S1_at--848--3051NONE
AATCTGCGCCTCATTCGAGCATTTT
NONE
Os.17547.1.S1_at--209--10251Chr08:3739045..3739070 (25 bp)
TTTGAGAAATTCCAGTCGCTTCCAA
NONE
Target Sequence 
AAGAAGACGGCCTCTGCCTCATCGTCCCCTGATCCCCTCGAGCTCGACACGTAGCCGATGCATCCATGTCCTACTAGTCT
TCGTCGTCGTCTTCTTCCTCGCACAGCTGGCGAAGCACCGATGGATCGAGCACCCATGGCGGCCATCAAAATCCTTCTGT
AAATTCACTTTGAAAGAATTGGACACTCCCTTTTCCGTTCGTTCAAACTTTGTTGTATGAATTTTGTAGAGTTCACTAAA
ATCCAACCCTGAATCTGCGCCTCATTCGAGCATTTTGAGAAATTCCAGTCGCTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17547.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis