Browse Element(s) Details


Os.12047.1.S1_a_at

Description gb:AK061735.1
DB_XREF= gi:32971753
TID=Os.12047.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ9990_A01.7 (OJ9990_A01.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D08, full insert sequence.
FL= gb:AK061735.1 gb:AK099558.1 gb:AK104547.1 gb:AK098953.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3802011/11Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os08g0661011/11Mps one binder kinase activator-like 1A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37960OsAffx.3427.1.S1_at11/113+21037491..21039161Acyl-CoA-binding protein, putative
LOC_Os03g37970Os.12362.1.S1_at10/113+21040969..2104319560S ribosomal protein L13-2, putative, expressed
LOC_Os03g37984Os.15816.1.S1_a_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g37984Os.10650.1.S1_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g38000Os.21763.1.S1_at11/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38000Os.57491.1.S1_at7/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38010Os.18577.1.S1_at10/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38010Os.36139.1.S1_at1/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38020Os.12047.1.S1_a_at11/113+21063427..21066926Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g38040OsAffx.3429.1.S1_at11/113+21070565..21071086hypothetical protein
LOC_Os03g38050Os.50014.1.S1_at10/113+21072516..21078010Galactosyltransferase family protein, expressed
LOC_Os03g38070NANA3+21086984..21089807retrotransposon protein, putative, unclassified
LOC_Os03g38076OsAffx.22722.1.S1_at2/113+21090275..21092564retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38076OsAffx.22722.1.S1_x_at2/113+21090275..21092564retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0009524cellular_componentphragmoplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12047.1.S1_a_at--516--8852Chr08:3720584..3720608 (25 bp)
TGATGAATCTATATTTCCCCAAAAG
LOC_Os08g06610
Os.12047.1.S1_a_at--1143--3572Chr08:3720754..3720778 (25 bp)
CATTCCCGCCAAACTTCAAGGAGGT
LOC_Os08g06610
Os.12047.1.S1_a_at--876--7032Chr08:3720780..3720804 (25 bp)
GTAAAGACAATTTTCAAGCGCTTGT
LOC_Os08g06610
Os.12047.1.S1_a_at--803--2672Chr08:3720795..3720819 (25 bp)
AAGCGCTTGTTTCGTGTTTATGCCC
LOC_Os08g06610
Os.12047.1.S1_a_at--625--7432Chr08:3720808..3720832 (25 bp)
GTGTTTATGCCCACATATATCACTC
LOC_Os08g06610
Os.12047.1.S1_a_at--369--7992Chr08:3720860..3720884 (25 bp)
GGAGGAGGCCCATCTTAACACGTGC
LOC_Os08g06610
Os.12047.1.S1_a_at--390--8412Chr08:3720866..3720890 (25 bp)
GGCCCATCTTAACACGTGCTTCAAG
LOC_Os08g06610
Os.12047.1.S1_a_at--343--10492Chr08:3720874..3720898 (25 bp)
TTAACACGTGCTTCAAGCACTTCAT
LOC_Os08g06610
Os.12047.1.S1_a_at--332--2212Chr08:3720708..3721064 (25 bp)
ACAACTGAATTTGGCCTGATTGACA
LOC_Os08g06610
Os.12047.1.S1_a_at--1159--5292Chr08:3721066..3721090 (25 bp)
GAAGGAGCTGGCTCCACTCCAGGAG
LOC_Os08g06610
Os.12047.1.S1_a_at--1034--4332Chr08:3721084..3721108 (25 bp)
CCAGGAGCTCATCGAATCGATTATT
LOC_Os08g06610
Target Sequence 
TGATGAATCTATATTTCCCCAAAAGCTTGGCACACCATTCCCGCCAAACTTCAAGGAGGTTGTAAAGACAATTTTCAAGC
GCTTGTTTCGTGTTTATGCCCACATATATCACTCCCATTTTCAGAAGATTGTCAGCCTCAAGGAGGAGGCCCATCTTAAC
ACGTGCTTCAAGCACTTCATCCTGTTTACAACTGAATTTGGCCTGATTGACAAGAAGGAGCTGGCTCCACTCCAGGAGCT
CATCGAATCGATTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12047.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis