Browse Element(s) Details


Os.21763.1.S1_at

Description gb:AK061051.1
DB_XREF= gi:32971069
TID=Os.21763.1
CNT=79
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-G04, full insert sequence.
FL= gb:AK099146.1 gb:AK061051.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3800011/1140S ribosomal protein S3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37950Os.47720.1.S1_s_at11/113+21032951..21035420PCI domain containing protein, expressed
LOC_Os03g37954Os.51289.1.S1_at11/113+21035991..21036590expressed protein
LOC_Os03g37960OsAffx.3427.1.S1_at11/113+21037491..21039161Acyl-CoA-binding protein, putative
LOC_Os03g37970Os.12362.1.S1_at10/113+21040969..2104319560S ribosomal protein L13-2, putative, expressed
LOC_Os03g37984Os.15816.1.S1_a_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g37984Os.10650.1.S1_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g38000Os.21763.1.S1_at11/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38000Os.57491.1.S1_at7/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38010Os.18577.1.S1_at10/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38010Os.36139.1.S1_at1/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38020Os.12047.1.S1_a_at11/113+21063427..21066926Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g38040OsAffx.3429.1.S1_at11/113+21070565..21071086hypothetical protein
LOC_Os03g38050Os.50014.1.S1_at10/113+21072516..21078010Galactosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21763.1.S1_at--321--9291Chr03:21052496..21052520 (25 bp)
TCCGGTGTTGATCGCTGAGGCTTAA
LOC_Os03g38000
Os.21763.1.S1_at--396--3311Chr03:21052455..21052479 (25 bp)
CACATCTTTTTGAAGCCTTGGGCAT
LOC_Os03g38000
Os.21763.1.S1_at--108--8271Chr03:21052435..21052459 (25 bp)
GGCATGTTTGACAGTACCCTCTTAA
LOC_Os03g38000
Os.21763.1.S1_at--850--5652Chr03:21052426..21052450 (25 bp)
GACAGTACCCTCTTAAAACTCCAGT
LOC_Os03g38000
Os.21763.1.S1_at--309--3431Chr03:21052405..21052429 (25 bp)
CAGTTTGGCCAGTTCTAGCTAGGTC
LOC_Os03g38000
Os.21763.1.S1_at--595--9471Chr03:21052380..21052404 (25 bp)
TCTGTCTTCAGTAAGGGCAATGCAA
LOC_Os03g38000
Os.21763.1.S1_at--70--1071Chr03:21052367..21052391 (25 bp)
AGGGCAATGCAACAGTCGGTTACTT
LOC_Os03g38000
Os.21763.1.S1_at--966--3271Chr03:21052327..21052351 (25 bp)
CAAAAGCTATGTACTGGTGTCATTT
LOC_Os03g38000
Os.21763.1.S1_at--703--10691Chr03:21052281..21052305 (25 bp)
TTGCCGAGACAAAAGTTCCAGTCAT
LOC_Os03g38000
Os.21763.1.S1_at--823--4371Chr03:21052249..21052273 (25 bp)
CCAAATCTTGGTTTGTAGCCTCAAA
LOC_Os03g38000
Os.21763.1.S1_at--211--5851Chr03:21052205..21052229 (25 bp)
GAGCGCAAACCGGTTTTGTTTCAGT
LOC_Os03g38000
Target Sequence 
TCCGGTGTTGATCGCTGAGGCTTAAGCTTATGATGATATTTCACATCTTTTTGAAGCCTTGGGCATGTTTGACAGTACCC
TCTTAAAACTCCAGTTTGGCCAGTTCTAGCTAGGTCTCTGTCTTCAGTAAGGGCAATGCAACAGTCGGTTACTTNAGTTT
TATTATGGACAAAAGCTATGTACTGGTGTCATTTTATTTTTNTTTAAACTAAGTTTTGCCGAGACAAAAGTTCCAGTCAT
ATGTATGCCAAATCTTGGTTTGTAGCCTCAAATGCNTCCCATCTTGTTTGTGAGCGCAAACCGGTTTTGTTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis