Browse Element(s) Details


Os.47720.1.S1_s_at

Description gb:BI812878
DB_XREF= gi:16578783
DB_XREF=G003C12
CLONE=G003C12
TID=Os.47720.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47720 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_174210.1 (A.thaliana) 19S proteosome subunit 9, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3795011/11PCI domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37920Os.53904.1.S1_at11/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.6056.1.S1_x_at2/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.26070.2.S1_x_at1/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.6056.1.S1_at1/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37930OsAffx.3426.1.S1_at11/113+21015268..21019598Potassium transporter 1, putative
LOC_Os03g37940OsAffx.13225.1.S1_at11/113+21021183..21021653hypothetical protein
LOC_Os03g37950Os.47720.1.S1_s_at11/113+21032951..21035420PCI domain containing protein, expressed
LOC_Os03g37954Os.51289.1.S1_at11/113+21035991..21036590expressed protein
LOC_Os03g37960OsAffx.3427.1.S1_at11/113+21037491..21039161Acyl-CoA-binding protein, putative
LOC_Os03g37970Os.12362.1.S1_at10/113+21040969..2104319560S ribosomal protein L13-2, putative, expressed
LOC_Os03g37984Os.15816.1.S1_a_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g37984Os.10650.1.S1_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g38000Os.21763.1.S1_at11/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38000Os.57491.1.S1_at7/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38010Os.18577.1.S1_at10/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38010Os.36139.1.S1_at1/113+21056780..21060623Nuf2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009640biological_processphotomorphogenesis
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47720.1.S1_s_at--463--4231Chr03:21034888..21034912 (25 bp)
CCGTACGCAAGGGTGGAGATTGCAC
LOC_Os03g37950
Os.47720.1.S1_s_at--764--8691Chr03:21035140..21035164 (25 bp)
TGTCTTTACAGTCATTTGCGTTTAC
LOC_Os03g37950
Os.47720.1.S1_s_at--809--6791Chr03:21035167..21035191 (25 bp)
GTTATCTCTAATTTCATCTTGCTTC
LOC_Os03g37950
Os.47720.1.S1_s_at--931--3731Chr03:21035174..21035198 (25 bp)
CTAATTTCATCTTGCTTCAGTTACT
LOC_Os03g37950
Os.47720.1.S1_s_at--449--9651Chr03:21035190..21035214 (25 bp)
TCAGTTACTGTTGGTCTTCATAGAC
LOC_Os03g37950
Os.47720.1.S1_s_at--1145--4971Chr03:21035246..21035270 (25 bp)
GCATGTTGATCTCTCCTAGTTAAAG
LOC_Os03g37950
Os.47720.1.S1_s_at--161--7751Chr03:21035307..21035331 (25 bp)
GGTGTTTCTTACTTCGTATGGTGCA
LOC_Os03g37950
Os.47720.1.S1_s_at--688--3651Chr03:21035314..21035338 (25 bp)
CTTACTTCGTATGGTGCAACTGTGC
LOC_Os03g37950
Os.47720.1.S1_s_at--458--7771Chr03:21035326..21035350 (25 bp)
GGTGCAACTGTGCTAGTACCATAAA
LOC_Os03g37950
Os.47720.1.S1_s_at--1101--6971Chr03:21035341..21035365 (25 bp)
GTACCATAAACATAACCTGATGCCT
LOC_Os03g37950
Os.47720.1.S1_s_at--899--8851Chr03:21035358..21035382 (25 bp)
TGATGCCTAGGTTATATTTGTTATG
LOC_Os03g37950
Target Sequence 
CCGTACGCAAGGGTGGAGATTGCACATATCGCGGAGATGATTGAGTTGCCAGTTGATCATGTTGAGAAGAAGCTGTCGCA
GATGATCCTTGACAAGAAGTTTGCAGGAAATCTCGATCAAGGTGCTGGCTGCCTCATTATCTTTGAGGATCCCAAGACCG
AGGCACATCTTCCCTGCTACACTTGAAACTATTTCGAATGTTGGGAAGGTCNTTGACAGTCTTTACATGAGGTNTGCCAA
GATCATGGCTTAATGTCTTTACAGTCATTTGCGTTTACTTGTTATCTCTAATTTCATCTTGCTTCAGTTACTGTTGGTCT
TCATAGACATTTAATCCTGCATATTGACATTTTTATTCTGCATGTTGATCTCTCCTAGTTAAAGAAAAGGTACCCTNTTG
AATGCNAACAAATACANTTTGGTGTTTCTTACTTCGTATGGTGCAACTGTGCTAGTACCATAAACATAACCTGATGCCTA
GGTTATATTTGTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47720.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis