Browse Element(s) Details


Os.53904.1.S1_at

Description gb:AK100723.1
DB_XREF= gi:32985932
TID=Os.53904.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023116K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023116K06, full insert sequence.
FL= gb:AK100723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3792011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37869NANA3+20991077..20991337hypothetical protein
LOC_Os03g37878Os.51393.1.S1_x_at11/113+20992009..20992927expressed protein
LOC_Os03g37890Os.46012.2.S1_x_at10/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.46012.3.S1_x_at7/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.27088.1.A1_x_at5/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.54691.1.S1_x_at1/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37900NANA3+21004927..21005340scarecrow transcription factor family protein, putative
LOC_Os03g37920Os.53904.1.S1_at11/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.6056.1.S1_x_at2/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.26070.2.S1_x_at1/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.6056.1.S1_at1/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37930OsAffx.3426.1.S1_at11/113+21015268..21019598Potassium transporter 1, putative
LOC_Os03g37940OsAffx.13225.1.S1_at11/113+21021183..21021653hypothetical protein
LOC_Os03g37950Os.47720.1.S1_s_at11/113+21032951..21035420PCI domain containing protein, expressed
LOC_Os03g37954Os.51289.1.S1_at11/113+21035991..21036590expressed protein
LOC_Os03g37960OsAffx.3427.1.S1_at11/113+21037491..21039161Acyl-CoA-binding protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53904.1.S1_at--412--10191Chr03:21011986..21012010 (25 bp)
TATATCGTTTTTAGTTCCTCGGGTG
LOC_Os03g37920
Os.53904.1.S1_at--748--7411Chr03:21011897..21011921 (25 bp)
GTGTTGATCCTACCCATTGTAGCAT
LOC_Os03g37920
Os.53904.1.S1_at--846--1531Chr03:21011877..21011901 (25 bp)
AGCATGTTATTTCCTGTTCTCTTAA
LOC_Os03g37920
Os.53904.1.S1_at--343--3071Chr03:21011854..21011878 (25 bp)
AATCTTGTTTGTTTTCATCCTCTTA
LOC_Os03g37920
Os.53904.1.S1_at--991--3531Chr03:21011839..21011863 (25 bp)
CATCCTCTTATATGCTACATCCATG
LOC_Os03g37920
Os.53904.1.S1_at--381--9871Chr03:21011824..21011848 (25 bp)
TACATCCATGTGACCTATAGTTGAA
LOC_Os03g37920
Os.53904.1.S1_at--262--8611Chr03:21011677..21011701 (25 bp)
TGGTGAATCTTCGACCATGCCTACT
LOC_Os03g37920
Os.53904.1.S1_at--958--2811Chr03:21011606..21011630 (25 bp)
AAGATTGCACATTTTCCTCGTCTGC
LOC_Os03g37920
Os.53904.1.S1_at--956--7711Chr03:21011532..21011556 (25 bp)
GGGTGTGTGCATTAATCTGTACTCA
LOC_Os03g37920
Os.53904.1.S1_at--122--2051Chr03:21011504..21011528 (25 bp)
ACTTCTTTTACTGTGTTGAACTCGA
LOC_Os03g37920
Os.53904.1.S1_at--171--1991Chr03:21011485..21011509 (25 bp)
ACTCGATTTTATTTCCAATTGGGTG
LOC_Os03g37920
Target Sequence 
TATATCGTTTTTAGTTCCTCGGGTGGTGAAAGGCCCAAAAAGTCGACGATCAAAAGATGTAGTTGAAAAGAAGAAATGGC
AGAAGAAATGTGTTGATCCTACCCATTGTAGCATGTTATTTCCTGTTCTCTTAATCTTGTTTGTTTTCATCCTCTTATAT
GCTACATCCATGTGACCTATAGTTGAAGATCCAAATAATGCGTCAGAAAATAGAGATGAAGATGCTGGTGATGTGTATGG
GCAATCTTCAACCATGGATGCAAATGATATGTATGGGCAATCTTCAACCATGGTTGCAAATGATGTATATGGTGAATCTT
CGACCATGCCTACTCCTTTGATCCAAGGCGGATATACAAATCTTTTATTTGAAGTCCAACAAGATTGCACATTTTCCTCG
TCTGCTAGAAAGTTACATTTTCCAATGAATAGTAGGCCTTTTCAGAATGGATTTGGGTGTGTGCATTAATCTGTACTCAT
TTACTTCTTTTACTGTGTTGAACTCGATTTTATTTCCAATTGGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis