Browse Element(s) Details


OsAffx.3426.1.S1_at

Description tigr:9631.m03638
TID=OsAffx.3426.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative potassium transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3793011/11Potassium transporter 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37869NANA3+20991077..20991337hypothetical protein
LOC_Os03g37878Os.51393.1.S1_x_at11/113+20992009..20992927expressed protein
LOC_Os03g37890Os.46012.2.S1_x_at10/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.46012.3.S1_x_at7/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.27088.1.A1_x_at5/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.54691.1.S1_x_at1/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37900NANA3+21004927..21005340scarecrow transcription factor family protein, putative
LOC_Os03g37920Os.53904.1.S1_at11/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.6056.1.S1_x_at2/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.26070.2.S1_x_at1/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.6056.1.S1_at1/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37930OsAffx.3426.1.S1_at11/113+21015268..21019598Potassium transporter 1, putative
LOC_Os03g37940OsAffx.13225.1.S1_at11/113+21021183..21021653hypothetical protein
LOC_Os03g37950Os.47720.1.S1_s_at11/113+21032951..21035420PCI domain containing protein, expressed
LOC_Os03g37954Os.51289.1.S1_at11/113+21035991..21036590expressed protein
LOC_Os03g37960OsAffx.3427.1.S1_at11/113+21037491..21039161Acyl-CoA-binding protein, putative
LOC_Os03g37970Os.12362.1.S1_at10/113+21040969..2104319560S ribosomal protein L13-2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0016020cellular_componentmembrane
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3426.1.S1_at--424--731Chr03:21015929..21015953 (25 bp)
ATGTTGACACCTCGGAGCGATTCCT
LOC_Os03g37930
OsAffx.3426.1.S1_at--27--1631Chr03:21015914..21015938 (25 bp)
AGCGATTCCTCTTCCGTCAAGTAGA
LOC_Os03g37930
OsAffx.3426.1.S1_at--194--6511Chr03:21015848..21015872 (25 bp)
GATATCGTGATTCCCTCGAGGAGGC
LOC_Os03g37930
OsAffx.3426.1.S1_at--783--5691Chr03:21015819..21015843 (25 bp)
GACTTTGTTGTTACCCTTCTTGAGA
LOC_Os03g37930
OsAffx.3426.1.S1_at--1144--7651Chr03:21015776..21015800 (25 bp)
GGGATGTTAATCTCTACACCGATGA
LOC_Os03g37930
OsAffx.3426.1.S1_at--641--1131Chr03:21015738..21015762 (25 bp)
AGTGCCCATAGTTCTTGCAACCATA
LOC_Os03g37930
OsAffx.3426.1.S1_at--1091--5151Chr03:21015722..21015746 (25 bp)
GCAACCATAGCTTTTCTCGGGAGAA
LOC_Os03g37930
OsAffx.3426.1.S1_at--1155--5411Chr03:21015700..21015724 (25 bp)
GAAGCCTTCTGGACGGTACGCGGTA
LOC_Os03g37930
OsAffx.3426.1.S1_at--993--5251Chr03:21015648..21015672 (25 bp)
GAATCCTTCTCTGAGATCACAGCTC
LOC_Os03g37930
OsAffx.3426.1.S1_at--631--1051Chr03:21015395..21015419 (25 bp)
AGGTGGTTGTAAGGCCTCACTCATC
LOC_Os03g37930
OsAffx.3426.1.S1_at--412--7351Chr03:21015351..21015375 (25 bp)
GTGAACTACGTCTACTCTTTCTTAA
LOC_Os03g37930
Target Sequence 
ATGTTGACACCTCGGAGCGATTCCTCTTCCGTCAAGTAGAGCTAAAGGACTACAAAGTGTTTCGATGTGTGGCACGATAT
GGATATCGTGATTCCCTCGAGGAGGCCAAGGACTTTGTTGTTACCCTTCTTGAGAACCTTCAGGATTATATAAGGGATGT
TAATCTCTACACCGATGAGCCACACACCATTAGTGCCCATAGTTCTTGCAACCATAGCTTTTCTCGGGAGAAGCCTTCTG
GACGGTACGCGGTACATGCCGAGGATATGCTTACACCAATTGAATCCTTCTCTGAGATCACAGCTCTATCTAACTATGGA
AGCGACCGTCTACCACACTTCAAGGCAAGTAAGATGAATATGGAGGAGTTGGCGAAGATTGAGCAAGAGCAGATGTTCAT
TGAGAAGGAGATGGAAAAAGGTGTTGTATACATACTTGGAGAAACCGAGGTGGTTGTAAGGCCTCACTCATCGCTTCTTA
AGAAGATAGTAGTGAACTACGTCTACTCTTTCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis