Browse Element(s) Details


Os.51393.1.S1_x_at

Description gb:AK062701.1
DB_XREF= gi:32972719
TID=Os.51393.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-B02, full insert sequence.
FL= gb:AK062701.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3787811/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37850NANA3+20967507..20970260hypothetical protein
LOC_Os03g37860OsAffx.13222.1.S1_at10/113+20974579..20976543hypothetical protein
LOC_Os03g37869NANA3+20991077..20991337hypothetical protein
LOC_Os03g37878Os.51393.1.S1_x_at11/113+20992009..20992927expressed protein
LOC_Os03g37890Os.46012.2.S1_x_at10/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.46012.3.S1_x_at7/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.27088.1.A1_x_at5/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.54691.1.S1_x_at1/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37900NANA3+21004927..21005340scarecrow transcription factor family protein, putative
LOC_Os03g37920Os.53904.1.S1_at11/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.6056.1.S1_x_at2/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.26070.2.S1_x_at1/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.6056.1.S1_at1/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37930OsAffx.3426.1.S1_at11/113+21015268..21019598Potassium transporter 1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51393.1.S1_x_at--1104--2611Chr03:20992510..20992534 (25 bp)
AACCGCACGGATTTGTCGTCGTCGT
LOC_Os03g37878
Os.51393.1.S1_x_at--702--9091Chr03:20992472..20992496 (25 bp)
TGCTCATCATCCCAATTTGTCGTCG
LOC_Os03g37878
Os.51393.1.S1_x_at--924--10691Chr03:20992386..20992410 (25 bp)
TTGCCATCCGTCGTTGTTGCCCGTT
LOC_Os03g37878
Os.51393.1.S1_x_at--273--10051Chr03:20992324..20992348 (25 bp)
TAGTCGCCGCCGCATGGATTTGTCA
LOC_Os03g37878
Os.51393.1.S1_x_at--218--5011Chr03:20992313..20992337 (25 bp)
GCATGGATTTGTCATCGCCGTCCGC
LOC_Os03g37878
Os.51393.1.S1_x_at--791--1652Chr01:30845414..30845438 (25 bp)
AGCCGTTGCCATCTTTAGTCGCCGT
NONE
Os.51393.1.S1_x_at--409--10031Chr03:20992237..20992261 (25 bp)
TAGTCGCCGTCGCACGGATTTGTCG
LOC_Os03g37878
Os.51393.1.S1_x_at--665--8031Chr03:20992160..20992184 (25 bp)
GGAGTCAAGGATGCCTAGCAGAAGA
LOC_Os03g37878
Os.51393.1.S1_x_at--18--7711Chr03:20992082..20992106 (25 bp)
GGGTCCCAATGTCATATACCTAAAA
LOC_Os03g37878
Os.51393.1.S1_x_at--1067--831Chr03:20992045..20992069 (25 bp)
ATGGAGAGTCTGTTGTAGTGAGCAA
LOC_Os03g37878
Os.51393.1.S1_x_at--53--7392Chr01:30845651..30845675 (25 bp)
GTGAGCAACGAGATTAACTTGCTAA
NONE
Target Sequence 
AACCGCACGGATTTGTCGTCGTCGTCCGCCGTCGTCGCTGCTCATCATCCCAATTTGTCGTCGCCGCCAGCCGTCGCCAT
CCATAGTCGCCGCCACACGGATCTGTCATCGCCATCCGCCGTCGTTGCCATCCGTCGTTGTTGCCCGTTGTCGCCGCCCG
CCGTCGCCGCCATCCGTCGCCATCCTTAGTCGCCGCCGCATGGATTTGTCATCGCCGTCCGCCGTCGCCGCCCGTCGTCG
CCGCCCGCCGTTGCCGCCAGCCGTTGCCATCTTTAGTCGCCGTCGCACGGATTTGTCGTCACCGCCCGTCGTCGCCGCCC
GCCGTCGCCGCGATAGAGAGAGAGGGCCAAGGAGTCAAGGATGCCTAGCAGAAGAGGAAGAGGGGGAGAAAGAAGGGGAA
GAAGTTGGGATGTAGAGACTGACATGTGGGGTCCCAATGTCATATACCTAAAATAGAGAGGATATATGGAGAGTCTGTTG
TAGTGAGCAACGAGATTAACTTGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51393.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis