Browse Element(s) Details


OsAffx.13222.1.S1_at

Description tigr:9631.m03632
TID=OsAffx.13222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3786010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37840Os.20541.1.S1_at11/113+20957422..20962259Potassium transporter 1, putative, expressed
LOC_Os03g37850NANA3+20967507..20970260hypothetical protein
LOC_Os03g37860OsAffx.13222.1.S1_at10/113+20974579..20976543hypothetical protein
LOC_Os03g37869NANA3+20991077..20991337hypothetical protein
LOC_Os03g37878Os.51393.1.S1_x_at11/113+20992009..20992927expressed protein
LOC_Os03g37890Os.46012.2.S1_x_at10/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.46012.3.S1_x_at7/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.27088.1.A1_x_at5/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.54691.1.S1_x_at1/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13222.1.S1_at--917--3271Chr03:20975580..20975604 (25 bp)
CAAATATACCGTGGGATATGCAGCA
LOC_Os03g37860
OsAffx.13222.1.S1_at--504--10134Chr11:17323387..17323784 (25 bp)
TATGCAGCAATTACTGGGTATGACG
NONE
OsAffx.13222.1.S1_at--732--3151NONE
CAATTACTGGGTATGACGGTTGGGA
NONE
OsAffx.13222.1.S1_at--828--5871Chr03:20975103..20975127 (25 bp)
GAGCGTCGATGCCAAACCCCAAATC
LOC_Os03g37860
OsAffx.13222.1.S1_at--266--351Chr03:20974748..20974772 (25 bp)
ATAACTGCCAACAGCAACTTCAGCC
LOC_Os03g37860
OsAffx.13222.1.S1_at--1111--4391Chr03:20974742..20974766 (25 bp)
GCCAACAGCAACTTCAGCCGGCGGT
LOC_Os03g37860
OsAffx.13222.1.S1_at--136--10531Chr03:20974730..20974754 (25 bp)
TTCAGCCGGCGGTGCTCAAGTCCTC
LOC_Os03g37860
OsAffx.13222.1.S1_at--162--7771Chr03:20974720..20974744 (25 bp)
GGTGCTCAAGTCCTCCCGCGAGGAC
LOC_Os03g37860
OsAffx.13222.1.S1_at--637--4151Chr03:20974704..20974728 (25 bp)
CGCGAGGACGTGACTCAACGGCAGT
LOC_Os03g37860
OsAffx.13222.1.S1_at--754--5751Chr03:20974698..20974722 (25 bp)
GACGTGACTCAACGGCAGTTGTCGC
LOC_Os03g37860
OsAffx.13222.1.S1_at--279--8951Chr03:20974694..20974718 (25 bp)
TGACTCAACGGCAGTTGTCGCCGTC
LOC_Os03g37860
Target Sequence 
CAAATATACCGTGGGATATGCAGCAATTACTGGGTATGACGGTTGGGAGAAGGGGAAATGTCCGAACTACCCCGCAACCG
CCATCAGGGAGTCATCTGGAGCGTCGATGCCAAACCCCAAATCCAACGGTGGAGATGATGTTGGCGGTATAGAATTGGCA
TTTAATAACTGCCAACAGCAACTTCAGCCGGCGGTGCTCAAGTCCTCCCGCGAGGACGTGACTCAACGGCAGTTGTCGCC
GTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis