Browse Element(s) Details


Os.20541.1.S1_at

Description gb:AK066919.1
DB_XREF= gi:32976937
TID=Os.20541.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.20541 (NCBI UniGene Cluster)
UG_TITLE=Partial mRNA for putative potasium transporter (HAK16 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089M07, full insert sequence.
FL= gb:AK066919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3784011/11Potassium transporter 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37830Os.16325.1.S1_at11/113+20933250..20940389potassium uptake protein, expressed
LOC_Os03g37840Os.20541.1.S1_at11/113+20957422..20962259Potassium transporter 1, putative, expressed
LOC_Os03g37850NANA3+20967507..20970260hypothetical protein
LOC_Os03g37860OsAffx.13222.1.S1_at10/113+20974579..20976543hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20541.1.S1_at--916--6331Chr03:20958099..20958123 (25 bp)
GATGCTTACACCAATCCAATCATTT
LOC_Os03g37840
Os.20541.1.S1_at--301--10391Chr03:20958077..20958101 (25 bp)
TTTTCTGAGCTCACAATGCATCCTG
LOC_Os03g37840
Os.20541.1.S1_at--206--4991Chr03:20958060..20958084 (25 bp)
GCATCCTGTTGGTATGAGCAGCCGA
LOC_Os03g37840
Os.20541.1.S1_at--1138--5931Chr03:20958045..20958069 (25 bp)
GAGCAGCCGATTAGCGCAATTCCAA
LOC_Os03g37840
Os.20541.1.S1_at--1070--8131Chr03:20957846..20957870 (25 bp)
GGACAATGGTGTGGTTTACATACTT
LOC_Os03g37840
Os.20541.1.S1_at--410--731Chr03:20957716..20957740 (25 bp)
ATGTTGTCTATTCCACGCCGCAAGT
LOC_Os03g37840
Os.20541.1.S1_at--328--4131Chr03:20957701..20957725 (25 bp)
CGCCGCAAGTTGCTCAAGGTTGGAA
LOC_Os03g37840
Os.20541.1.S1_at--529--7711Chr03:20957620..20957644 (25 bp)
GGGTGTAGATTTGTCGAGCAAGCAT
LOC_Os03g37840
Os.20541.1.S1_at--262--651Chr03:20957590..20957614 (25 bp)
ATGCATGCAGGGTTTGCTTACTTGC
LOC_Os03g37840
Os.20541.1.S1_at--1000--4892Chr06:12783791..12783810 (20 bp)
GCTTACTTGCAAATGTACTTGGATT
NONE
Os.20541.1.S1_at--932--9691Chr03:20957448..20957472 (25 bp)
TCACAATGCGATATATGGGTTCCAT
LOC_Os03g37840
Target Sequence 
GATGCTTACACCAATCCAATCATTTTCTGAGCTCACAATGCATCCTGTTGGTATGAGCAGCCGATTAGCGCAATTCCAAA
CAACTAAGATGAGCCTTGAAGAGATGTTGAAGATTGAGGAAGACCAAAAGTTGATCCAACGAGAAGTGGACAATGGTGTG
GTTTACATACTTGGGGAGAGTGAAGTGGTAGCGAAACCACATTCCAACNTGCTTAAGAAAGTTGTTGTAAACTACATATT
CAACTTTCTGAGGAAAAACTCTCGAAAAGGAGAGAAGATGTTGTCTATTCCACGCCGCAAGTTGCTCAAGGTTGGAATCA
CGTANGAAATATAAACATGCCAACAATCAGTAAGATGGTGGCTTATACACAAGGGGTGTAGATTTGTCGAGCAAGCATAT
ATCATGCATGCAGGGTTTGCTTACTTGCAAATGTACTTGGATTTTGTTTGCTTGNGTGACTCTCCATGATAGGAAAAAAA
ANTAAAAGAATTACATGCAAGGAGGAAAATATGCCAGCAAAATGAAAACAGTCATAATCGAGAATATCACAATGCGATAT
ATGGGTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis