Browse Element(s) Details


OsAffx.26070.2.S1_x_at

Description tigr:9636.m02993
TID=OsAffx.26070.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3004011/11transposon protein, putative, unclassified
LOC_Os03g216609/11transposon protein, putative, unclassified, expressed
LOC_Os04g196408/11hypothetical protein
LOC_Os03g379201/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30010NANA8+18299898..18305602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g30020Os.12400.4.S1_at11/118+18319856..18325328expressed protein
LOC_Os08g30020Os.12400.2.S1_x_at10/118+18319856..18325328expressed protein
LOC_Os08g30020Os.12400.1.S1_x_at1/118+18319856..18325328expressed protein
LOC_Os08g30030Os.8747.3.S1_x_at4/118+18328310..18328636hypothetical protein
LOC_Os08g30030Os.33750.2.S1_x_at2/118+18328310..18328636hypothetical protein
LOC_Os08g30040OsAffx.26070.3.S1_x_at11/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30040OsAffx.26070.2.S1_x_at11/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30040Os.49801.1.S1_s_at2/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30050Os.54774.1.S1_at2/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050Os.54774.1.S1_x_at2/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050Os.19099.1.S1_x_at1/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050OsAffx.25367.1.S1_at1/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30060Os.10450.1.S1_at11/118+18341325..18347944proton pump interactor, putative, expressed
LOC_Os08g30070Os.24594.1.A1_s_at11/118+18348098..18353766expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26070.2.S1_x_at--108--5553Chr08:18332032..18332056 (25 bp)
GAAACTTTGAAAACACATGCTGCAC
LOC_Os08g30040
OsAffx.26070.2.S1_x_at--88--3531Chr08:18332047..18332071 (25 bp)
CATGCTGCACGTATCTCTCAAAAGG
LOC_Os08g30040
OsAffx.26070.2.S1_x_at--473--2933Chr08:18332068..18332092 (25 bp)
AAGGCAACATCCATCGCTTTGAAAT
LOC_Os08g30040
OsAffx.26070.2.S1_x_at--190--6213Chr08:18332152..18332176 (25 bp)
GAGGCAGATAGTTCTCTAAGCAAGA
LOC_Os08g30040
OsAffx.26070.2.S1_x_at--472--7394Chr08:18332192..18332216 (25 bp)
GTGAGGTTCCTCTAAATTCAAATGA
LOC_Os08g30040
OsAffx.26070.2.S1_x_at--177--7353Chr08:18332240..18332264 (25 bp)
GTGCAATATCAATTAGAGTTCCTCG
LOC_Os08g30040
OsAffx.26070.2.S1_x_at--587--5932Chr08:18332255..18332279 (25 bp)
GAGTTCCTCGAGTGGTCAAAGGCCC
LOC_Os08g30040
OsAffx.26070.2.S1_x_at--290--8233Chr08:18332577..18332601 (25 bp)
GGCAATCCTCGACAATGGCTGCATA
LOC_Os08g30040
OsAffx.26070.2.S1_x_at--1097--7853Chr08:18332607..18332631 (25 bp)
GGTTTGGGCAATCCTCGACCATGGA
LOC_Os08g30040
OsAffx.26070.2.S1_x_at--760--7973Chr08:18332629..18332653 (25 bp)
GGATGCTCCTTTAATCCAAGGCGGA
LOC_Os08g30040
OsAffx.26070.2.S1_x_at--1056--211Chr08:18332668..18332692 (25 bp)
ATTTGGAGTTCAGCAAGATTCAGCC
LOC_Os08g30040
Target Sequence 
GAAACTTTGAAAACACATGCTGCACGTATCTCTCAAAAGGCAACATCCATCGCTTTGAAATGTTCAGTTTCGAAAGAACT
TCTTGATGATTTGGAGAAAGCCATAAATAATTTGGACTTGGAGGCAGATAGTTCTCTAAGCAAGATGCAAGAAAAAACAT
GTGAGGTTCCTCTAAATTCAAATGACTGTGTTATGGACACATTAAATGGTGCAATATCAATTAGAGTTCCTCGAGTGGTC
AAAGGCCCAAAGAGTAGACGATCAAAAGATGCAGTTGAAAAGAAGAAACGGAAGAAAACAAAAACTGCTAAGAATAAAGG
AGAAGATCTAAATAATGCATCAGAAGATGAAGATGAAGATGTTGGTGATGTGTGTGGGCAATCTTTGACCATGGCTGCAA
ATGATGTGTGTGGGCAATCCTCGACCATGGCTGCATATGATGTGTATGGGCAATCCTCGACAATGGCTGCATATGATGGG
TTTGGGCAATCCTCGACCATGGATGCTCCTTTAATCCAAGGCGGATTTACAAGTCTTTTATTTGGAGTTCAGCAAGATTC
AGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26070.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis