Browse Element(s) Details


OsAffx.3427.1.S1_at

Description tigr:9631.m03641
TID=OsAffx.3427.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative Acyl-CoA-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3796011/11Acyl-CoA-binding protein, putative
LOC_Os11g245101/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37920Os.53904.1.S1_at11/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.6056.1.S1_x_at2/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.26070.2.S1_x_at1/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.6056.1.S1_at1/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37930OsAffx.3426.1.S1_at11/113+21015268..21019598Potassium transporter 1, putative
LOC_Os03g37940OsAffx.13225.1.S1_at11/113+21021183..21021653hypothetical protein
LOC_Os03g37950Os.47720.1.S1_s_at11/113+21032951..21035420PCI domain containing protein, expressed
LOC_Os03g37954Os.51289.1.S1_at11/113+21035991..21036590expressed protein
LOC_Os03g37960OsAffx.3427.1.S1_at11/113+21037491..21039161Acyl-CoA-binding protein, putative
LOC_Os03g37970Os.12362.1.S1_at10/113+21040969..2104319560S ribosomal protein L13-2, putative, expressed
LOC_Os03g37984Os.15816.1.S1_a_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g37984Os.10650.1.S1_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g38000Os.21763.1.S1_at11/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38000Os.57491.1.S1_at7/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38010Os.18577.1.S1_at10/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38010Os.36139.1.S1_at1/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38020Os.12047.1.S1_a_at11/113+21063427..21066926Mps one binder kinase activator-like 1A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0000062molecular_functionacyl-CoA binding
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3427.1.S1_at--546--2731Chr03:21037697..21037721 (25 bp)
AAGCAACTCCAGGAGGAGGCTGCTG
LOC_Os03g37960
OsAffx.3427.1.S1_at--300--3831Chr03:21037675..21037699 (25 bp)
CTGCTCTCAAGGCTGTGTTTAGGGC
LOC_Os03g37960
OsAffx.3427.1.S1_at--496--3751Chr03:21037672..21037696 (25 bp)
CTCTCAAGGCTGTGTTTAGGGCCTA
LOC_Os03g37960
OsAffx.3427.1.S1_at--408--3211Chr03:21037668..21037692 (25 bp)
CAAGGCTGTGTTTAGGGCCTATTTA
LOC_Os03g37960
OsAffx.3427.1.S1_at--431--7816Chr11:6132063..6132515 (25 bp)
TGTTTAGGGCCTATTTAGTTGGTGA
NONE
OsAffx.3427.1.S1_at--941--8951Chr03:21037638..21037662 (25 bp)
TGAAATGAATATTTTTGAGTGTCAC
LOC_Os03g37960
OsAffx.3427.1.S1_at--116--94537Chr11:24655894..24655915 (22 bp)
TCGGACGTTTGACCAGATGTCGAAG
NONE
OsAffx.3427.1.S1_at--1027--2411Chr03:21037566..21037590 (25 bp)
AAAACAAATTGTATACTCGCCTGGA
LOC_Os03g37960
OsAffx.3427.1.S1_at--243--2471Chr03:21037564..21037588 (25 bp)
AACAAATTGTATACTCGCCTGGAAC
LOC_Os03g37960
OsAffx.3427.1.S1_at--290--2071Chr03:21037561..21037585 (25 bp)
AAATTGTATACTCGCCTGGAACCCG
LOC_Os03g37960
OsAffx.3427.1.S1_at--62--8751Chr03:21037557..21037581 (25 bp)
TGTATACTCGCCTGGAACCCGCGAG
LOC_Os03g37960
Target Sequence 
AAGCAACTCCAGGAGGAGGCTGCTGCTCTCAAGGCTGTGTTTAGGGCCTATTTAGTTGGTGAAATGAATATTTTTGAGTG
TCACATCGGACGTTTGACCAGATGTCGAAGGGGTTTTCGGACACAAATGAAAAAACAAATTGTATACTCGCCTGGAACCC
GCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis