Browse Element(s) Details


Os.36139.1.S1_at

Description gb:AK064406.1
DB_XREF= gi:32974424
TID=Os.36139.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ9990_A01.6 (OJ9990_A01.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-H09, full insert sequence.
FL= gb:AK064406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0660011/11Nuf2 family protein, expressed
LOC_Os03g380101/11Nuf2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06540Os.36756.1.S1_at11/118+3691049..3691818expressed protein
LOC_Os08g06550Os.12390.1.S1_at5/118+3691986..3694155Acyl-CoA-binding protein, putative, expressed
LOC_Os08g06560OsAffx.21983.1.S1_at10/118+3696299..3699438hypothetical protein
LOC_Os08g06570NANA8+3701705..3707845retrotransposon protein, putative, unclassified
LOC_Os08g06580Os.28943.1.S1_x_at1/118+3708558..3711635retrotransposon protein, putative, unclassified
LOC_Os08g06590OsAffx.5724.1.S1_x_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.2.S1_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.1.S1_at8/118+3713914..3714991hypothetical protein
LOC_Os08g06600Os.36139.1.S1_at11/118+3716022..3719897Nuf2 family protein, expressed
LOC_Os08g06610Os.12047.1.S1_a_at11/118+3720558..3721117Mps one binder kinase activator-like 1A, putative
LOC_Os08g06620OsAffx.16857.1.S1_s_at11/118+3721757..3722500expressed protein
LOC_Os08g06630Os.3407.1.S1_a_at10/118+3726171..3730177Sigma-70 region 2 family protein, expressed
LOC_Os08g06640OsAffx.9796.1.S1_x_at11/118+3733845..3739068expressed protein
LOC_Os08g06640Os.17547.1.S1_at9/118+3733845..3739068expressed protein
LOC_Os08g06659Os.31625.1.S1_at11/118+3741880..3743529expressed protein
LOC_Os08g06659OsAffx.29067.1.S1_s_at11/118+3741880..3743529expressed protein
LOC_Os08g06659Os.31625.2.S1_x_at11/118+3741880..3743529expressed protein
LOC_Os08g06680OsAffx.5725.1.S1_at11/118+3744313..3744615hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36139.1.S1_at--474--5051Chr08:3716682..3716706 (25 bp)
GCAGAAGAACTACAGCTGATATATG
LOC_Os08g06600
Os.36139.1.S1_at--480--9872Chr08:3716672..3716696 (25 bp)
TACAGCTGATATATGCTAAATTTCA
LOC_Os08g06600
Os.36139.1.S1_at--226--311Chr08:3716222..3716246 (25 bp)
ATAGCCACTTGGAGAAGATAGCCTA
LOC_Os08g06600
Os.36139.1.S1_at--917--1251Chr08:3716207..3716231 (25 bp)
AGATAGCCTAGTGTGTTTTATGCCA
LOC_Os08g06600
Os.36139.1.S1_at--577--8671Chr08:3716196..3716220 (25 bp)
TGTGTTTTATGCCACAGCTGTAAAT
LOC_Os08g06600
Os.36139.1.S1_at--127--591Chr08:3716188..3716212 (25 bp)
ATGCCACAGCTGTAAATTTGGAATT
LOC_Os08g06600
Os.36139.1.S1_at--379--7371Chr08:3716142..3716166 (25 bp)
GTGACAGTTATGGACCTTATGGTCT
LOC_Os08g06600
Os.36139.1.S1_at--722--8091Chr08:3716131..3716155 (25 bp)
GGACCTTATGGTCTGTTTGAACCTC
LOC_Os08g06600
Os.36139.1.S1_at--434--3671Chr08:3716127..3716151 (25 bp)
CTTATGGTCTGTTTGAACCTCGTCT
LOC_Os08g06600
Os.36139.1.S1_at--591--3091Chr08:3716083..3716107 (25 bp)
AATACTTCATCGAATTATCTGCAGT
LOC_Os08g06600
Os.36139.1.S1_at--52--2291Chr08:3716048..3716072 (25 bp)
AAATGCCTTGAATCACTCTGATATG
LOC_Os08g06600
Target Sequence 
GCAGAAGAACTACAGCTGATATATGCTAAATTTCAACAAATTGGACATGCGTTTACTTGCTACAAGGATAATTTTAAGTC
TTTCTTGGAACAAGTTGATGAGGTGAGCAAAGAAACTTTAGAAAGTTTAGATCGTCAAGCTGTGGAGCCATTGGACACAT
CTGCAACATTGTAGATTGAGAAAGAGAACTCCTGCAGCCCCGCTCCCTGAAAAGAGGATAGCCACTTGGAGAAGATAGCC
TAGTGTGTTTTATGCCACAGCTGTAAATTTGGAATTGAGATGTTTTTGTTATCACTGGTGACAGTTATGGACCTTATGGT
CTGTTTGAACCTCGTCTGACCAATTCGGTGACTGAGAATACTTCATCGAATTATCTGCAGTAGTTATGTAAAAATGCCTT
GAATCACTCTGATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis