Browse Element(s) Details


OsAffx.16857.1.S1_s_at

Description tigr:9636.m00597
TID=OsAffx.16857.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0662011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06560OsAffx.21983.1.S1_at10/118+3696299..3699438hypothetical protein
LOC_Os08g06570NANA8+3701705..3707845retrotransposon protein, putative, unclassified
LOC_Os08g06580Os.28943.1.S1_x_at1/118+3708558..3711635retrotransposon protein, putative, unclassified
LOC_Os08g06590OsAffx.5724.1.S1_x_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.2.S1_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.1.S1_at8/118+3713914..3714991hypothetical protein
LOC_Os08g06600Os.36139.1.S1_at11/118+3716022..3719897Nuf2 family protein, expressed
LOC_Os08g06610Os.12047.1.S1_a_at11/118+3720558..3721117Mps one binder kinase activator-like 1A, putative
LOC_Os08g06620OsAffx.16857.1.S1_s_at11/118+3721757..3722500expressed protein
LOC_Os08g06630Os.3407.1.S1_a_at10/118+3726171..3730177Sigma-70 region 2 family protein, expressed
LOC_Os08g06640OsAffx.9796.1.S1_x_at11/118+3733845..3739068expressed protein
LOC_Os08g06640Os.17547.1.S1_at9/118+3733845..3739068expressed protein
LOC_Os08g06659Os.31625.1.S1_at11/118+3741880..3743529expressed protein
LOC_Os08g06659OsAffx.29067.1.S1_s_at11/118+3741880..3743529expressed protein
LOC_Os08g06659Os.31625.2.S1_x_at11/118+3741880..3743529expressed protein
LOC_Os08g06680OsAffx.5725.1.S1_at11/118+3744313..3744615hypothetical protein
LOC_Os08g06690OsAffx.21982.1.S1_x_at11/118+3746663..3748451hypothetical protein
LOC_Os08g06690OsAffx.1199.1.S1_at1/118+3746663..3748451hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0003891molecular_functiondelta DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16857.1.S1_s_at--280--851Chr08:3722086..3722110 (25 bp)
ATGGACATGCGGTACGGGCCCTGCC
LOC_Os08g06620
OsAffx.16857.1.S1_s_at--424--1091Chr08:3721956..3721980 (25 bp)
AGGGCCGCGTCTAGCTCTAGCACCA
LOC_Os08g06620
OsAffx.16857.1.S1_s_at--1004--9351Chr08:3721923..3721947 (25 bp)
TCGACCGATCCGCTTCCAGAAAGTT
LOC_Os08g06620
OsAffx.16857.1.S1_s_at--546--6731Chr08:3721901..3721925 (25 bp)
GTTCTAGTAGCTTGTATGTGTTTTA
LOC_Os08g06620
OsAffx.16857.1.S1_s_at--913--2832Chr08:3721877..3721901 (25 bp)
AAGTAGGAACAGCTTCTCCTCTGCT
LOC_Os08g06620
OsAffx.16857.1.S1_s_at--118--1831Chr08:3721842..3721866 (25 bp)
ACGCCTCGTGGTGCTTGCATCGACA
LOC_Os08g06620
OsAffx.16857.1.S1_s_at--396--7331Chr08:3721832..3721856 (25 bp)
GTGCTTGCATCGACAGTTCATTTCA
LOC_Os08g06620
OsAffx.16857.1.S1_s_at--1007--1211Chr08:3721818..3721842 (25 bp)
AGTTCATTTCAAACCGCTGCCTGAT
LOC_Os08g06620
OsAffx.16857.1.S1_s_at--54--9711Chr08:3721810..3721834 (25 bp)
TCAAACCGCTGCCTGATGAGTCAGT
LOC_Os08g06620
OsAffx.16857.1.S1_s_at--12--711Chr08:3721795..3721819 (25 bp)
ATGAGTCAGTGATCGGTGCCATCTT
LOC_Os08g06620
OsAffx.16857.1.S1_s_at--96--7411Chr08:3721787..3721811 (25 bp)
GTGATCGGTGCCATCTTGTGTTCTT
LOC_Os08g06620
Target Sequence 
ATGGACATGCGGTACGGGCCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCGCCGCGCCGCCGCGCTCGGCCTCGCCCC
GCCGCCCGCCGTCATCGCCGTCTGCTCCGACGACCAGCCGTGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCACCAACACC
CGATCGACCGATCCGCTTCCAGAAAGTTCTAGTAGCTTGTATGTGTTTTAAGTAGGAACAGCTTCTCCTCTGCTTCCATC
TGCCACGCCTCGTGGTGCTTGCATCGACAGTTCATTTCAAACCGCTGCCTGATGAGTCAGTGATCGGTGCCATCTTGTGT
TCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16857.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis