Browse Element(s) Details


Os.12390.1.S1_at

Description gb:AY121834.1
DB_XREF= gi:22001009
GEN=ACBP
TID=Os.12390.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.12390 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) acyl-CoA-binding protein (ACBP) mRNA, complete cds.
PROD=acyl-CoA-binding protein
FL= gb:AK059406.1 gb:AK122061.1 gb:AY121834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g065505/11Acyl-CoA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06480Os.15438.1.S1_at11/118+3660748..3669467expressed protein
LOC_Os08g06490Os.31710.1.S1_at11/118+3670687..3673857pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.2.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.1.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500Os.25378.2.A1_at6/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.7080.1.S1_x_at1/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06510Os.25378.1.S1_at11/118+3679713..3681665Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g06520Os.8869.1.S1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_x_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_s_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.8869.1.S1_x_at10/118+3684401..3687023expressed protein
LOC_Os08g06530Os.8000.1.S1_at11/118+3687961..3690299Rubredoxin family protein, expressed
LOC_Os08g06540Os.36756.1.S1_at11/118+3691049..3691818expressed protein
LOC_Os08g06550Os.12390.1.S1_at5/118+3691986..3694155Acyl-CoA-binding protein, putative, expressed
LOC_Os08g06560OsAffx.21983.1.S1_at10/118+3696299..3699438hypothetical protein
LOC_Os08g06570NANA8+3701705..3707845retrotransposon protein, putative, unclassified
LOC_Os08g06580Os.28943.1.S1_x_at1/118+3708558..3711635retrotransposon protein, putative, unclassified
LOC_Os08g06590OsAffx.5724.1.S1_x_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.2.S1_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.1.S1_at8/118+3713914..3714991hypothetical protein
LOC_Os08g06600Os.36139.1.S1_at11/118+3716022..3719897Nuf2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000062molecular_functionacyl-CoA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12390.1.S1_at--550--5371Chr08:3694098..3694122 (25 bp)
GAAGAATCTGAAAAACTTTAAGCCG
LOC_Os08g06550
Os.12390.1.S1_at--369--4771NONE
GCTGCTTGCAGCCTCTTTAAGAAGT
NONE
Os.12390.1.S1_at--1087--4911NONE
GCTTGCAGCCTCTTTAAGAAGTTAT
NONE
Os.12390.1.S1_at--515--4411NONE
GCCTCTTTAAGAAGTTATTGAACTC
NONE
Os.12390.1.S1_at--586--7111NONE
GTCAGCTTGAACAACTCTATGCTAA
NONE
Os.12390.1.S1_at--143--5511Chr08:3692189..3692208 (20 bp)
GAACAACTCTATGCTAATCTTGGTT
LOC_Os08g06550
Os.12390.1.S1_at--147--2551NONE
AACTCTATGCTAATCTTGGTTTGCT
NONE
Os.12390.1.S1_at--582--111NONE
ATTCTATTCAATTCGGGATGTGAAC
NONE
Os.12390.1.S1_at--254--9591Chr08:3692047..3692071 (25 bp)
TCTTGTAATCTTTCATCTCTCTGGC
LOC_Os08g06550
Os.12390.1.S1_at--40--471Chr08:3692033..3692057 (25 bp)
ATCTCTCTGGCTGTGTACTGCACAA
LOC_Os08g06550
Os.12390.1.S1_at--919--8331Chr08:3692025..3692049 (25 bp)
GGCTGTGTACTGCACAATAGAAAAA
LOC_Os08g06550
Target Sequence 
GAAGAATCTGAAAAACTTTAAGCCGCTATGGGTCTGCAGGAGGATTTTGAGCAGTACGCCGAGAAGGCGAAGACCTTGCC
GGAGAGCACTAGCAACGAGAACAAGCTTATCCTCTATGGACTCTACAAGCAGGCCACCGTTGGAGATGTCAATACTGCTC
GTCCTGGCATATTCGCCCAGAGGGACAGGGCGAAATGGGATGCATGGAAAGCTGTTGAAGGCAAATCGAAGGAGGAAGCA
ATTGAGCGACTACATCACCAAGGTGAAGCAGCTCCTGGAGGAGGCTTGCTGCTTGCAGCCTCTTTAAGAAGTTATTGAAC
TCTATGCTACATGGCTTCTNGTCAGCTTGAACAACTCTATGCTAATCTTGGTTTGCTNGACAACTTACCATTCTATTCAA
TTCGGGATGTGAACTATGTACCTCTTTGTGTACTGNTTGCATAATTTATCCATCTATTTATGAAGACTATTAGTCCTATG
AATCATATTATCTTGTAATCTTTCATCTCTCTGGCTGTGTACTGCACAATAGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis