Browse Element(s) Details


Os.25378.2.A1_at

Description gb:AK067263.1
DB_XREF= gi:32977281
TID=Os.25378.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0577B11.19 (P0577B11.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096G17, full insert sequence.
FL= gb:AK067263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g065006/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06480Os.15438.1.S1_at11/118+3660748..3669467expressed protein
LOC_Os08g06490Os.31710.1.S1_at11/118+3670687..3673857pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.2.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.1.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500Os.25378.2.A1_at6/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.7080.1.S1_x_at1/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06510Os.25378.1.S1_at11/118+3679713..3681665Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g06520Os.8869.1.S1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_x_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_s_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.8869.1.S1_x_at10/118+3684401..3687023expressed protein
LOC_Os08g06530Os.8000.1.S1_at11/118+3687961..3690299Rubredoxin family protein, expressed
LOC_Os08g06540Os.36756.1.S1_at11/118+3691049..3691818expressed protein
LOC_Os08g06550Os.12390.1.S1_at5/118+3691986..3694155Acyl-CoA-binding protein, putative, expressed
LOC_Os08g06560OsAffx.21983.1.S1_at10/118+3696299..3699438hypothetical protein
LOC_Os08g06570NANA8+3701705..3707845retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25378.2.A1_at--1044--7391Chr08:3681904..3681928 (25 bp)
GTGGTTGCCACGAGTTAGGTGTTCT
LOC_Os08g06500
Os.25378.2.A1_at--1050--1031NONE
AGGTGTTCTATGAGGTGGTTGCCCC
NONE
Os.25378.2.A1_at--1118--3671NONE
CTATGAGGTGGTTGCCCCTGAAAAC
NONE
Os.25378.2.A1_at--1100--9911Chr08:3682082..3682106 (25 bp)
TACTGATTTTGATTTACGATGCATT
LOC_Os08g06500
Os.25378.2.A1_at--503--2431Chr08:3682162..3682186 (25 bp)
AAAATCATAAATTCAGCCCTAGCCT
LOC_Os08g06500
Os.25378.2.A1_at--790--1651Chr08:3682176..3682200 (25 bp)
AGCCCTAGCCTGTATAATGGTCTCC
LOC_Os08g06500
Os.25378.2.A1_at--252--8751NONE
TGTATAATGGTCTCCAAGTCTCCCT
NONE
Os.25378.2.A1_at--503--2851NONE
AAGTCTCCCTTTATAGTCATGAATA
NONE
Os.25378.2.A1_at--126--5531Chr08:3682261..3682285 (25 bp)
GAAAACGCATTTGTGATACCCTAGC
LOC_Os08g06500
Os.25378.2.A1_at--1042--4931Chr08:3682267..3682291 (25 bp)
GCATTTGTGATACCCTAGCCCCGAG
LOC_Os08g06500
Os.25378.2.A1_at--221--10651NONE
TTCCCAATGAAAGTCATTTTAGCCT
NONE
Target Sequence 
GTGGTTGCCACGAGTTAGGTGTTCTATGAGGTGGTTGCCCCTGAAAACCGAACTTTTTGGTAACCACGAAACTTGAAGAA
AAACCTTTAATAAAAAGATATTCAAAATCAAAGATAAACCCAGAGTATTGAAATTTGATTAGAATCCAATAAATGGCTAC
TAAGATGTAAGATGTAGATACTGATTTTGATTTACGATGCATTTAATAACGCAAATTTAAATTCTCTAGTAAGAAAATCA
TAAATCTTTTCAAGTTGAAAAATCATAAATTCAGCCCTAGCCTGTATAATGGTCTCCAAGTCTCCCTTTATAGTCATGAA
TATCCCCCAAATAGTATATCTATTTTGAATTTGTTGAGAAAACGCATTTGTGATACCCTAGCCCCGAGCCAAACCTCATA
CTCCCTCTGTTTCCCAATGAAAGTCATTTTAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25378.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis