Browse Element(s) Details


Os.8000.1.S1_at

Description gb:AK060121.1
DB_XREF= gi:32970139
TID=Os.8000.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0577B11.21 (P0577B11.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F09, full insert sequence.
FL= gb:AK070227.1 gb:AK060121.1 gb:AK060661.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0653011/11Rubredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06480Os.15438.1.S1_at11/118+3660748..3669467expressed protein
LOC_Os08g06490Os.31710.1.S1_at11/118+3670687..3673857pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.2.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.1.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500Os.25378.2.A1_at6/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.7080.1.S1_x_at1/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06510Os.25378.1.S1_at11/118+3679713..3681665Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g06520Os.8869.1.S1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_x_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_s_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.8869.1.S1_x_at10/118+3684401..3687023expressed protein
LOC_Os08g06530Os.8000.1.S1_at11/118+3687961..3690299Rubredoxin family protein, expressed
LOC_Os08g06540Os.36756.1.S1_at11/118+3691049..3691818expressed protein
LOC_Os08g06550Os.12390.1.S1_at5/118+3691986..3694155Acyl-CoA-binding protein, putative, expressed
LOC_Os08g06560OsAffx.21983.1.S1_at10/118+3696299..3699438hypothetical protein
LOC_Os08g06570NANA8+3701705..3707845retrotransposon protein, putative, unclassified
LOC_Os08g06580Os.28943.1.S1_x_at1/118+3708558..3711635retrotransposon protein, putative, unclassified
LOC_Os08g06590OsAffx.5724.1.S1_x_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.2.S1_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.1.S1_at8/118+3713914..3714991hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8000.1.S1_at--474--6031Chr08:3689298..3689322 (25 bp)
GAGATGAACTATGGCCTGCAGATAA
LOC_Os08g06530
Os.8000.1.S1_at--54--7691Chr08:3689327..3689351 (25 bp)
GGGTTCACCAAGACAGCCATCCAGG
LOC_Os08g06530
Os.8000.1.S1_at--789--5711Chr08:3689360..3689384 (25 bp)
GACTCTGTCTACTTTGTGGTTAGCA
LOC_Os08g06530
Os.8000.1.S1_at--347--8391Chr08:3689615..3689639 (25 bp)
GGCGCCTCCGAGATTTGGCCGGAAA
LOC_Os08g06530
Os.8000.1.S1_at--298--7511Chr08:3689792..3689816 (25 bp)
GTGGATACATATACTTCCTTCCCAA
LOC_Os08g06530
Os.8000.1.S1_at--640--271Chr08:3689947..3689971 (25 bp)
ATATGGCTGCCCACAATGCAACGCA
LOC_Os08g06530
Os.8000.1.S1_at--1147--7271Chr08:3690024..3690048 (25 bp)
GTGCGCTACCACCTATTACAGTGAT
LOC_Os08g06530
Os.8000.1.S1_at--871--7111Chr08:3690050..3690074 (25 bp)
GTCAGTTTGATAATCGGCATTGCCG
LOC_Os08g06530
Os.8000.1.S1_at--256--8311Chr08:3690082..3690106 (25 bp)
GGCTTTGCTTGTATATGGCCTTCAA
LOC_Os08g06530
Os.8000.1.S1_at--218--4791Chr08:3690110..3690134 (25 bp)
GCTGCCAATATCTTCACAGGTTTTT
LOC_Os08g06530
Os.8000.1.S1_at--221--1531Chr08:3690155..3690179 (25 bp)
AGCAGATTGCTGGTGCACTCTCTTA
LOC_Os08g06530
Target Sequence 
GAGATGAACTATGGCCTGCAGATAAGCTGGGGTTCACCAAGACAGCCATCCAGGCAAAGCCAGACTCTGTCTACTTTGTG
GTTAGCAGGGGTGCACAAGTTGATGTGAAGCGACTTCCGAAAAGGCCGGCGCCTCCGAGATTTGGCCGGAAATTGACGGA
ATCACAAAAGGCTAGAGCAACACACATTTGCCTTGATTGTGGATACATATACTTCCTTCCCAAGCCTTTCGAAGAACAGC
CTGATGAATATGGCTGCCCACAATGCAACGCACCAAAGAAGCGGTTCGCGAAATATGATGCAGAAACCGGGAGGGCGATT
GGTGGTGCGCTACCACCTATTACAGTGATCGTCAGTTTGATAATCGGCATTGCCGGAGTAGGGGCTTTGCTTGTATATGG
CCTTCAATAGGCTGCCAATATCTTCACAGGTTTTTGACTGTGTAACAAGAAGCTCAGCAGATTGCTGGTGCACTCTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis