Browse Element(s) Details


Os.46608.1.A1_x_at

Description gb:CB634430
DB_XREF= gi:29629421
DB_XREF=OSIIEb13P02.r
CLONE=OSIIEb13P02
TID=Os.46608.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0577B11.20 (P0577B11.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0652011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06480Os.15438.1.S1_at11/118+3660748..3669467expressed protein
LOC_Os08g06490Os.31710.1.S1_at11/118+3670687..3673857pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.2.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.1.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500Os.25378.2.A1_at6/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.7080.1.S1_x_at1/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06510Os.25378.1.S1_at11/118+3679713..3681665Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g06520Os.8869.1.S1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_x_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_s_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.8869.1.S1_x_at10/118+3684401..3687023expressed protein
LOC_Os08g06530Os.8000.1.S1_at11/118+3687961..3690299Rubredoxin family protein, expressed
LOC_Os08g06540Os.36756.1.S1_at11/118+3691049..3691818expressed protein
LOC_Os08g06550Os.12390.1.S1_at5/118+3691986..3694155Acyl-CoA-binding protein, putative, expressed
LOC_Os08g06560OsAffx.21983.1.S1_at10/118+3696299..3699438hypothetical protein
LOC_Os08g06570NANA8+3701705..3707845retrotransposon protein, putative, unclassified
LOC_Os08g06580Os.28943.1.S1_x_at1/118+3708558..3711635retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46608.1.A1_x_at--85--4831Chr08:3686222..3686246 (25 bp)
GCTAAGAAAGATGAAGTTGAATACC
LOC_Os08g06520
Os.46608.1.A1_x_at--384--7931Chr08:3686835..3686859 (25 bp)
GGATATGGTTGCCACCTTGTTACCT
LOC_Os08g06520
Os.46608.1.A1_x_at--1117--6771Chr08:3686853..3686877 (25 bp)
GTTACCTCCCAGCTGCATTCTGTTT
LOC_Os08g06520
Os.46608.1.A1_x_at--1105--4171Chr08:3686860..3686884 (25 bp)
CCCAGCTGCATTCTGTTTCTTTTAA
LOC_Os08g06520
Os.46608.1.A1_x_at--825--3391Chr08:3686862..3686886 (25 bp)
CAGCTGCATTCTGTTTCTTTTAAGT
LOC_Os08g06520
Os.46608.1.A1_x_at--375--511Chr08:3686924..3686948 (25 bp)
ATCGTCCCGGATAAATGTGCATTGT
LOC_Os08g06520
Os.46608.1.A1_x_at--865--7231Chr08:3686927..3686951 (25 bp)
GTCCCGGATAAATGTGCATTGTACT
LOC_Os08g06520
Os.46608.1.A1_x_at--116--9851Chr08:3686935..3686959 (25 bp)
TAAATGTGCATTGTACTGGTACCCA
LOC_Os08g06520
Os.46608.1.A1_x_at--1045--2971Chr08:3686937..3686961 (25 bp)
AATGTGCATTGTACTGGTACCCATG
LOC_Os08g06520
Os.46608.1.A1_x_at--745--9611Chr08:3686963..3686987 (25 bp)
TCATCCTTTTGCACATGAGATATAT
LOC_Os08g06520
Os.46608.1.A1_x_at--446--10391Chr08:3686969..3686993 (25 bp)
TTTTGCACATGAGATATATTTGGCT
LOC_Os08g06520
Target Sequence 
GCTAAGAAAGATGAAGTTGAATACCTGNAAAGTCTAATAGAAGAGGTTGAAGAGAAANACNATGCCATGAAGGCTCGAAT
TGAACTCTNGAAGAAAGATGATGATTTGNCTGCAGGAAAACAAGTCCTTGAGAAGCTGATGCAATGCAATTNTGCACTNT
ACAATGGCCTTTGAGTTTCAGATTTTTAGCCGATCCGATGATTATTTACTTGCTGGAGTGAAAAGACATCTGTTGGATAG
CTGTGTAGTTTTAGATAGGATGTTGATCCAGGAATCGAGATGGATGCCCTGTAATGTGAAACAAATNNTGCAGTCCGTAT
GTTGGATATGGTTGCCACCTTGTTACCTCCCAGCTGCATTCTGTTTCTTTTAAGTCTGTGCTTTCTATATGGTATCTATG
GCTTGTTTTGTGATCGTCCCGGATAAATGTGCATTGTACTGGTACCCATGNTCATCCTTTTGCACATGAGATATATTTGG
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46608.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis